Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0529

Experiment: MoYLS4 with Cephalothin 1.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0528 and DvMF_0529 are separated by 250 nucleotidesDvMF_0529 and DvMF_0530 are separated by 319 nucleotides DvMF_0528: DvMF_0528 - protein of unknown function DUF111 (RefSeq), at 623,249 to 624,748 _0528 DvMF_0529: DvMF_0529 - aldo/keto reductase (RefSeq), at 624,999 to 626,201 _0529 DvMF_0530: DvMF_0530 - transcriptional regulator, AraC family (RefSeq), at 626,521 to 627,399 _0530 Position (kb) 624 625 626 627Strain fitness (log2 ratio) -1 0 1 2 3 4at 624.376 kb on + strand, within DvMF_0528at 624.465 kb on - strand, within DvMF_0528at 624.779 kb on - strandat 625.122 kb on - strand, within DvMF_0529at 625.392 kb on + strand, within DvMF_0529at 625.566 kb on + strand, within DvMF_0529at 625.610 kb on + strand, within DvMF_0529at 625.618 kb on + strand, within DvMF_0529at 625.618 kb on - strand, within DvMF_0529at 625.618 kb on - strand, within DvMF_0529at 625.685 kb on + strand, within DvMF_0529at 625.782 kb on + strand, within DvMF_0529at 625.783 kb on + strand, within DvMF_0529at 625.819 kb on - strand, within DvMF_0529at 626.196 kb on - strandat 626.201 kb on - strandat 626.328 kb on + strandat 626.714 kb on + strand, within DvMF_0530at 626.890 kb on - strand, within DvMF_0530at 626.956 kb on + strand, within DvMF_0530at 627.140 kb on - strand, within DvMF_0530

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Cephalothin 1.25 mg/ml
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624,376 + DvMF_0528 0.75 +0.6
624,465 - DvMF_0528 0.81 +0.4
624,779 - +0.5
625,122 - DvMF_0529 0.10 -0.1
625,392 + DvMF_0529 0.33 +0.4
625,566 + DvMF_0529 0.47 +0.2
625,610 + DvMF_0529 0.51 -0.8
625,618 + DvMF_0529 0.51 +0.2
625,618 - DvMF_0529 0.51 +0.1
625,618 - DvMF_0529 0.51 +3.8
625,685 + DvMF_0529 0.57 +1.0
625,782 + DvMF_0529 0.65 +0.1
625,783 + DvMF_0529 0.65 +0.6
625,819 - DvMF_0529 0.68 +0.3
626,196 - -0.1
626,201 - +0.3
626,328 + +0.2
626,714 + DvMF_0530 0.22 +0.5
626,890 - DvMF_0530 0.42 +0.6
626,956 + DvMF_0530 0.49 +0.4
627,140 - DvMF_0530 0.70 +0.2

Or see this region's nucleotide sequence