Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00022

Experiment: PYE with Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00021 and CCNA_00022 overlap by 4 nucleotidesCCNA_00022 and CCNA_00023 are separated by 182 nucleotidesCCNA_00023 and CCNA_00024 are separated by 16 nucleotides CCNA_00021: CCNA_00021 - putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL, at 20,840 to 23,032 _00021 CCNA_00022: CCNA_00022 - putative aerobic-type carbon monoxide dehydrogenase, small subunit CoxS, at 23,029 to 23,559 _00022 CCNA_00023: CCNA_00023 - putative periplasmic protein, at 23,742 to 24,074 _00023 CCNA_00024: CCNA_00024 - uroporphyrin-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase, at 24,091 to 24,981 _00024 Position (kb) 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 22.060 kb on + strand, within CCNA_00021at 22.060 kb on + strand, within CCNA_00021at 22.060 kb on + strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.068 kb on - strand, within CCNA_00021at 22.096 kb on - strand, within CCNA_00021at 22.105 kb on - strand, within CCNA_00021at 22.116 kb on + strand, within CCNA_00021at 22.123 kb on - strand, within CCNA_00021at 22.172 kb on + strand, within CCNA_00021at 22.198 kb on + strand, within CCNA_00021at 22.200 kb on + strand, within CCNA_00021at 22.208 kb on + strand, within CCNA_00021at 22.216 kb on - strand, within CCNA_00021at 22.249 kb on + strand, within CCNA_00021at 22.251 kb on + strand, within CCNA_00021at 22.257 kb on - strand, within CCNA_00021at 22.285 kb on + strand, within CCNA_00021at 22.293 kb on + strand, within CCNA_00021at 22.300 kb on + strand, within CCNA_00021at 22.300 kb on - strand, within CCNA_00021at 22.335 kb on + strand, within CCNA_00021at 22.389 kb on + strand, within CCNA_00021at 22.397 kb on - strand, within CCNA_00021at 22.412 kb on - strand, within CCNA_00021at 22.435 kb on + strand, within CCNA_00021at 22.438 kb on - strand, within CCNA_00021at 22.442 kb on + strand, within CCNA_00021at 22.451 kb on - strand, within CCNA_00021at 22.451 kb on - strand, within CCNA_00021at 22.459 kb on + strand, within CCNA_00021at 22.469 kb on + strand, within CCNA_00021at 22.469 kb on + strand, within CCNA_00021at 22.481 kb on + strand, within CCNA_00021at 22.494 kb on + strand, within CCNA_00021at 22.502 kb on - strand, within CCNA_00021at 22.504 kb on - strand, within CCNA_00021at 22.533 kb on + strand, within CCNA_00021at 22.533 kb on - strand, within CCNA_00021at 22.533 kb on - strand, within CCNA_00021at 22.550 kb on + strand, within CCNA_00021at 22.552 kb on + strand, within CCNA_00021at 22.558 kb on - strand, within CCNA_00021at 22.558 kb on - strand, within CCNA_00021at 22.632 kb on + strand, within CCNA_00021at 22.632 kb on + strand, within CCNA_00021at 22.679 kb on + strand, within CCNA_00021at 22.679 kb on + strand, within CCNA_00021at 22.706 kb on + strand, within CCNA_00021at 22.707 kb on + strand, within CCNA_00021at 22.707 kb on + strand, within CCNA_00021at 22.707 kb on + strand, within CCNA_00021at 22.707 kb on + strand, within CCNA_00021at 22.713 kb on + strand, within CCNA_00021at 22.715 kb on - strand, within CCNA_00021at 22.715 kb on - strand, within CCNA_00021at 22.719 kb on + strand, within CCNA_00021at 22.740 kb on + strand, within CCNA_00021at 22.740 kb on + strand, within CCNA_00021at 22.748 kb on - strand, within CCNA_00021at 22.748 kb on - strand, within CCNA_00021at 22.769 kb on - strand, within CCNA_00021at 22.787 kb on + strand, within CCNA_00021at 22.800 kb on + strand, within CCNA_00021at 22.815 kb on + strandat 22.860 kb on + strandat 22.860 kb on + strandat 22.873 kb on + strandat 22.873 kb on + strandat 22.873 kb on + strandat 22.873 kb on + strandat 22.881 kb on - strandat 22.881 kb on - strandat 22.881 kb on - strandat 22.918 kb on - strandat 22.924 kb on + strandat 22.972 kb on - strandat 22.988 kb on + strandat 23.008 kb on - strandat 23.050 kb on - strandat 23.090 kb on + strand, within CCNA_00022at 23.220 kb on - strand, within CCNA_00022at 23.232 kb on + strand, within CCNA_00022at 23.273 kb on - strand, within CCNA_00022at 23.297 kb on + strand, within CCNA_00022at 23.305 kb on - strand, within CCNA_00022at 23.307 kb on + strand, within CCNA_00022at 23.310 kb on - strand, within CCNA_00022at 23.326 kb on + strand, within CCNA_00022at 23.342 kb on + strand, within CCNA_00022at 23.366 kb on + strand, within CCNA_00022at 23.415 kb on - strand, within CCNA_00022at 23.415 kb on - strand, within CCNA_00022at 23.433 kb on + strand, within CCNA_00022at 23.462 kb on + strand, within CCNA_00022at 23.491 kb on + strand, within CCNA_00022at 23.491 kb on + strand, within CCNA_00022at 23.491 kb on + strand, within CCNA_00022at 23.494 kb on - strand, within CCNA_00022at 23.494 kb on - strand, within CCNA_00022at 23.548 kb on + strandat 23.548 kb on + strandat 23.548 kb on + strandat 23.556 kb on - strandat 23.556 kb on - strandat 23.556 kb on - strandat 23.556 kb on - strandat 23.598 kb on + strandat 23.607 kb on + strandat 23.609 kb on + strandat 23.609 kb on + strandat 23.627 kb on - strandat 23.627 kb on - strandat 23.632 kb on - strandat 23.666 kb on + strandat 23.674 kb on - strandat 23.723 kb on + strandat 23.724 kb on + strandat 23.732 kb on - strandat 23.739 kb on + strandat 23.876 kb on + strand, within CCNA_00023at 23.919 kb on - strand, within CCNA_00023at 23.965 kb on + strand, within CCNA_00023at 23.993 kb on + strand, within CCNA_00023at 24.001 kb on - strand, within CCNA_00023at 24.019 kb on - strand, within CCNA_00023at 24.020 kb on - strand, within CCNA_00023at 24.041 kb on - strandat 24.075 kb on + strandat 24.083 kb on - strandat 24.165 kb on + strandat 24.240 kb on + strand, within CCNA_00024at 24.283 kb on - strand, within CCNA_00024at 24.322 kb on + strand, within CCNA_00024at 24.322 kb on + strand, within CCNA_00024at 24.328 kb on - strand, within CCNA_00024at 24.358 kb on - strand, within CCNA_00024at 24.443 kb on + strand, within CCNA_00024at 24.444 kb on - strand, within CCNA_00024at 24.492 kb on - strand, within CCNA_00024at 24.492 kb on - strand, within CCNA_00024at 24.516 kb on + strand, within CCNA_00024at 24.516 kb on + strand, within CCNA_00024at 24.524 kb on - strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024at 24.531 kb on + strand, within CCNA_00024

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Spectinomycin 0.025 mg/ml
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22,060 + CCNA_00021 0.56 -0.3
22,060 + CCNA_00021 0.56 -0.6
22,060 + CCNA_00021 0.56 -1.1
22,068 - CCNA_00021 0.56 -1.6
22,068 - CCNA_00021 0.56 +0.1
22,068 - CCNA_00021 0.56 +0.1
22,068 - CCNA_00021 0.56 +0.2
22,068 - CCNA_00021 0.56 -0.1
22,068 - CCNA_00021 0.56 +1.4
22,068 - CCNA_00021 0.56 -0.3
22,068 - CCNA_00021 0.56 +0.4
22,096 - CCNA_00021 0.57 -2.3
22,105 - CCNA_00021 0.58 -0.3
22,116 + CCNA_00021 0.58 -0.9
22,123 - CCNA_00021 0.59 +0.1
22,172 + CCNA_00021 0.61 +0.3
22,198 + CCNA_00021 0.62 +2.0
22,200 + CCNA_00021 0.62 -2.4
22,208 + CCNA_00021 0.62 +0.4
22,216 - CCNA_00021 0.63 +1.6
22,249 + CCNA_00021 0.64 +0.2
22,251 + CCNA_00021 0.64 -1.5
22,257 - CCNA_00021 0.65 +0.9
22,285 + CCNA_00021 0.66 +0.8
22,293 + CCNA_00021 0.66 -1.1
22,300 + CCNA_00021 0.67 +0.7
22,300 - CCNA_00021 0.67 -0.3
22,335 + CCNA_00021 0.68 -0.0
22,389 + CCNA_00021 0.71 -2.9
22,397 - CCNA_00021 0.71 +0.6
22,412 - CCNA_00021 0.72 -0.7
22,435 + CCNA_00021 0.73 -1.4
22,438 - CCNA_00021 0.73 -1.2
22,442 + CCNA_00021 0.73 -1.3
22,451 - CCNA_00021 0.73 -1.8
22,451 - CCNA_00021 0.73 +0.8
22,459 + CCNA_00021 0.74 +0.2
22,469 + CCNA_00021 0.74 +0.2
22,469 + CCNA_00021 0.74 -0.0
22,481 + CCNA_00021 0.75 -2.8
22,494 + CCNA_00021 0.75 -0.4
22,502 - CCNA_00021 0.76 +0.7
22,504 - CCNA_00021 0.76 +0.3
22,533 + CCNA_00021 0.77 -0.2
22,533 - CCNA_00021 0.77 +0.2
22,533 - CCNA_00021 0.77 +0.4
22,550 + CCNA_00021 0.78 -0.3
22,552 + CCNA_00021 0.78 -0.9
22,558 - CCNA_00021 0.78 -0.5
22,558 - CCNA_00021 0.78 +0.3
22,632 + CCNA_00021 0.82 +0.2
22,632 + CCNA_00021 0.82 -0.3
22,679 + CCNA_00021 0.84 -0.0
22,679 + CCNA_00021 0.84 -0.8
22,706 + CCNA_00021 0.85 +0.2
22,707 + CCNA_00021 0.85 -0.4
22,707 + CCNA_00021 0.85 -2.9
22,707 + CCNA_00021 0.85 -1.1
22,707 + CCNA_00021 0.85 -0.2
22,713 + CCNA_00021 0.85 -0.9
22,715 - CCNA_00021 0.85 +0.7
22,715 - CCNA_00021 0.85 -0.2
22,719 + CCNA_00021 0.86 -2.2
22,740 + CCNA_00021 0.87 -1.1
22,740 + CCNA_00021 0.87 -1.1
22,748 - CCNA_00021 0.87 +1.3
22,748 - CCNA_00021 0.87 +1.0
22,769 - CCNA_00021 0.88 +0.4
22,787 + CCNA_00021 0.89 -2.1
22,800 + CCNA_00021 0.89 +0.3
22,815 + +2.2
22,860 + -1.0
22,860 + +0.4
22,873 + -1.4
22,873 + +1.1
22,873 + -1.4
22,873 + +0.1
22,881 - +0.5
22,881 - -0.2
22,881 - +0.6
22,918 - -0.1
22,924 + -1.5
22,972 - +1.1
22,988 + -1.0
23,008 - +0.1
23,050 - -0.2
23,090 + CCNA_00022 0.11 -0.5
23,220 - CCNA_00022 0.36 -1.6
23,232 + CCNA_00022 0.38 -0.4
23,273 - CCNA_00022 0.46 -1.4
23,297 + CCNA_00022 0.50 +0.9
23,305 - CCNA_00022 0.52 -0.0
23,307 + CCNA_00022 0.52 -0.6
23,310 - CCNA_00022 0.53 -0.3
23,326 + CCNA_00022 0.56 -1.1
23,342 + CCNA_00022 0.59 -1.3
23,366 + CCNA_00022 0.63 -1.3
23,415 - CCNA_00022 0.73 +0.2
23,415 - CCNA_00022 0.73 +0.3
23,433 + CCNA_00022 0.76 -0.5
23,462 + CCNA_00022 0.82 -0.6
23,491 + CCNA_00022 0.87 -0.7
23,491 + CCNA_00022 0.87 -0.9
23,491 + CCNA_00022 0.87 -1.0
23,494 - CCNA_00022 0.88 -1.2
23,494 - CCNA_00022 0.88 +0.4
23,548 + +1.7
23,548 + +0.2
23,548 + -2.0
23,556 - +2.4
23,556 - +0.2
23,556 - +1.1
23,556 - -0.0
23,598 + +0.1
23,607 + +1.2
23,609 + -0.2
23,609 + -0.0
23,627 - +1.1
23,627 - +2.1
23,632 - +1.7
23,666 + +0.7
23,674 - +0.5
23,723 + +0.9
23,724 + -0.3
23,732 - -0.7
23,739 + +0.8
23,876 + CCNA_00023 0.40 -0.2
23,919 - CCNA_00023 0.53 -0.3
23,965 + CCNA_00023 0.67 +0.9
23,993 + CCNA_00023 0.75 +1.2
24,001 - CCNA_00023 0.78 -0.2
24,019 - CCNA_00023 0.83 -1.4
24,020 - CCNA_00023 0.83 -2.9
24,041 - -0.2
24,075 + -1.1
24,083 - -2.5
24,165 + +0.8
24,240 + CCNA_00024 0.17 -0.8
24,283 - CCNA_00024 0.22 -0.3
24,322 + CCNA_00024 0.26 +1.0
24,322 + CCNA_00024 0.26 +0.3
24,328 - CCNA_00024 0.27 +0.2
24,358 - CCNA_00024 0.30 -0.0
24,443 + CCNA_00024 0.40 +1.2
24,444 - CCNA_00024 0.40 +2.3
24,492 - CCNA_00024 0.45 +0.8
24,492 - CCNA_00024 0.45 +2.2
24,516 + CCNA_00024 0.48 +1.4
24,516 + CCNA_00024 0.48 +1.0
24,524 - CCNA_00024 0.49 +0.6
24,531 + CCNA_00024 0.49 +0.3
24,531 + CCNA_00024 0.49 +0.7
24,531 + CCNA_00024 0.49 -0.1

Or see this region's nucleotide sequence