Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4987

Experiment: syringaldehyde 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4986 and Ac3H11_4987 are separated by 13 nucleotidesAc3H11_4987 and Ac3H11_4988 overlap by 4 nucleotides Ac3H11_4986 - High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1), at 149,922 to 151,103 _4986 Ac3H11_4987 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 151,117 to 151,935 _4987 Ac3H11_4988 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 151,932 to 153,734 _4988 Position (kb) 151 152Strain fitness (log2 ratio) -2 -1 0 1 2at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.159 kb on + strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.160 kb on - strand, within Ac3H11_4986at 150.181 kb on - strand, within Ac3H11_4986at 150.181 kb on - strand, within Ac3H11_4986at 150.181 kb on - strand, within Ac3H11_4986at 150.244 kb on - strand, within Ac3H11_4986at 150.247 kb on - strand, within Ac3H11_4986at 150.357 kb on + strand, within Ac3H11_4986at 150.358 kb on - strand, within Ac3H11_4986at 150.460 kb on - strand, within Ac3H11_4986at 150.612 kb on + strand, within Ac3H11_4986at 150.613 kb on - strand, within Ac3H11_4986at 150.630 kb on + strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.631 kb on - strand, within Ac3H11_4986at 150.783 kb on + strand, within Ac3H11_4986at 150.784 kb on - strand, within Ac3H11_4986at 150.784 kb on - strand, within Ac3H11_4986at 150.786 kb on + strand, within Ac3H11_4986at 150.787 kb on - strand, within Ac3H11_4986at 150.787 kb on - strand, within Ac3H11_4986at 150.789 kb on + strand, within Ac3H11_4986at 150.789 kb on + strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.790 kb on - strand, within Ac3H11_4986at 150.858 kb on + strand, within Ac3H11_4986at 150.858 kb on + strand, within Ac3H11_4986at 150.859 kb on - strand, within Ac3H11_4986at 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.171 kb on + strandat 151.172 kb on - strandat 151.172 kb on - strandat 151.172 kb on - strandat 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.462 kb on + strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.463 kb on - strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.485 kb on + strand, within Ac3H11_4987at 151.486 kb on - strand, within Ac3H11_4987at 151.486 kb on - strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.510 kb on + strand, within Ac3H11_4987at 151.511 kb on - strand, within Ac3H11_4987at 151.511 kb on - strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.516 kb on + strand, within Ac3H11_4987at 151.517 kb on - strand, within Ac3H11_4987at 151.559 kb on - strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.676 kb on + strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.677 kb on - strand, within Ac3H11_4987at 151.774 kb on + strand, within Ac3H11_4987at 151.775 kb on - strand, within Ac3H11_4987at 151.852 kb on + strand, within Ac3H11_4987at 151.906 kb on + strandat 151.906 kb on + strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 151.907 kb on - strandat 152.055 kb on + strandat 152.206 kb on - strand, within Ac3H11_4988at 152.206 kb on - strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.235 kb on + strand, within Ac3H11_4988at 152.236 kb on - strand, within Ac3H11_4988at 152.236 kb on - strand, within Ac3H11_4988at 152.236 kb on - strand, within Ac3H11_4988at 152.502 kb on + strand, within Ac3H11_4988at 152.502 kb on + strand, within Ac3H11_4988at 152.502 kb on + strand, within Ac3H11_4988at 152.503 kb on - strand, within Ac3H11_4988at 152.503 kb on - strand, within Ac3H11_4988at 152.503 kb on - strand, within Ac3H11_4988at 152.623 kb on - strand, within Ac3H11_4988at 152.623 kb on - strand, within Ac3H11_4988at 152.623 kb on - strand, within Ac3H11_4988at 152.854 kb on - strand, within Ac3H11_4988at 152.919 kb on + strand, within Ac3H11_4988at 152.919 kb on + strand, within Ac3H11_4988at 152.920 kb on - strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.932 kb on - strand, within Ac3H11_4988at 152.932 kb on - strand, within Ac3H11_4988

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 2.5 mM
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150,159 + Ac3H11_4986 0.20 +0.0
150,159 + Ac3H11_4986 0.20 -0.6
150,159 + Ac3H11_4986 0.20 -0.1
150,159 + Ac3H11_4986 0.20 +0.0
150,159 + Ac3H11_4986 0.20 +0.6
150,159 + Ac3H11_4986 0.20 +0.1
150,159 + Ac3H11_4986 0.20 +0.1
150,160 - Ac3H11_4986 0.20 -0.0
150,160 - Ac3H11_4986 0.20 +0.3
150,160 - Ac3H11_4986 0.20 +1.8
150,160 - Ac3H11_4986 0.20 -0.1
150,181 - Ac3H11_4986 0.22 +2.0
150,181 - Ac3H11_4986 0.22 -0.3
150,181 - Ac3H11_4986 0.22 -0.0
150,244 - Ac3H11_4986 0.27 +0.4
150,247 - Ac3H11_4986 0.27 -0.4
150,357 + Ac3H11_4986 0.37 -0.5
150,358 - Ac3H11_4986 0.37 +0.5
150,460 - Ac3H11_4986 0.46 -0.8
150,612 + Ac3H11_4986 0.58 -0.1
150,613 - Ac3H11_4986 0.58 -0.5
150,630 + Ac3H11_4986 0.60 +0.2
150,631 - Ac3H11_4986 0.60 -0.4
150,631 - Ac3H11_4986 0.60 -0.6
150,631 - Ac3H11_4986 0.60 -0.6
150,631 - Ac3H11_4986 0.60 +0.6
150,631 - Ac3H11_4986 0.60 -0.3
150,631 - Ac3H11_4986 0.60 -0.5
150,783 + Ac3H11_4986 0.73 -0.1
150,784 - Ac3H11_4986 0.73 -0.7
150,784 - Ac3H11_4986 0.73 -0.0
150,786 + Ac3H11_4986 0.73 -0.3
150,787 - Ac3H11_4986 0.73 -0.9
150,787 - Ac3H11_4986 0.73 +0.9
150,789 + Ac3H11_4986 0.73 -0.2
150,789 + Ac3H11_4986 0.73 -0.1
150,790 - Ac3H11_4986 0.73 +0.4
150,790 - Ac3H11_4986 0.73 +0.9
150,790 - Ac3H11_4986 0.73 +0.8
150,790 - Ac3H11_4986 0.73 -1.2
150,790 - Ac3H11_4986 0.73 -0.8
150,858 + Ac3H11_4986 0.79 -0.5
150,858 + Ac3H11_4986 0.79 -1.0
150,859 - Ac3H11_4986 0.79 -0.1
151,171 + -0.9
151,171 + -1.0
151,171 + +0.2
151,171 + -0.3
151,171 + -0.2
151,172 - -0.3
151,172 - -1.4
151,172 - +0.4
151,462 + Ac3H11_4987 0.42 -0.5
151,462 + Ac3H11_4987 0.42 -0.9
151,462 + Ac3H11_4987 0.42 +0.2
151,462 + Ac3H11_4987 0.42 +1.3
151,462 + Ac3H11_4987 0.42 -1.0
151,462 + Ac3H11_4987 0.42 -0.3
151,462 + Ac3H11_4987 0.42 -0.3
151,463 - Ac3H11_4987 0.42 +0.6
151,463 - Ac3H11_4987 0.42 +0.4
151,463 - Ac3H11_4987 0.42 -0.1
151,463 - Ac3H11_4987 0.42 +0.1
151,463 - Ac3H11_4987 0.42 -0.9
151,463 - Ac3H11_4987 0.42 +0.4
151,463 - Ac3H11_4987 0.42 -1.5
151,485 + Ac3H11_4987 0.45 +0.7
151,485 + Ac3H11_4987 0.45 +0.0
151,485 + Ac3H11_4987 0.45 -0.1
151,486 - Ac3H11_4987 0.45 -1.9
151,486 - Ac3H11_4987 0.45 -1.8
151,510 + Ac3H11_4987 0.48 -0.1
151,510 + Ac3H11_4987 0.48 -0.2
151,510 + Ac3H11_4987 0.48 +0.4
151,511 - Ac3H11_4987 0.48 -0.7
151,511 - Ac3H11_4987 0.48 +0.0
151,516 + Ac3H11_4987 0.49 +0.4
151,516 + Ac3H11_4987 0.49 +0.8
151,516 + Ac3H11_4987 0.49 -2.1
151,516 + Ac3H11_4987 0.49 +0.3
151,516 + Ac3H11_4987 0.49 +0.2
151,516 + Ac3H11_4987 0.49 +0.0
151,516 + Ac3H11_4987 0.49 -0.6
151,517 - Ac3H11_4987 0.49 -0.2
151,559 - Ac3H11_4987 0.54 -0.2
151,676 + Ac3H11_4987 0.68 +0.6
151,676 + Ac3H11_4987 0.68 -0.3
151,676 + Ac3H11_4987 0.68 -1.8
151,676 + Ac3H11_4987 0.68 -0.1
151,676 + Ac3H11_4987 0.68 -0.5
151,676 + Ac3H11_4987 0.68 +0.4
151,676 + Ac3H11_4987 0.68 +0.2
151,677 - Ac3H11_4987 0.68 +0.3
151,677 - Ac3H11_4987 0.68 +1.0
151,677 - Ac3H11_4987 0.68 -1.0
151,677 - Ac3H11_4987 0.68 -1.0
151,677 - Ac3H11_4987 0.68 -0.0
151,677 - Ac3H11_4987 0.68 -0.7
151,677 - Ac3H11_4987 0.68 +0.2
151,677 - Ac3H11_4987 0.68 +0.5
151,677 - Ac3H11_4987 0.68 +0.3
151,677 - Ac3H11_4987 0.68 -0.6
151,677 - Ac3H11_4987 0.68 -0.4
151,677 - Ac3H11_4987 0.68 +0.2
151,774 + Ac3H11_4987 0.80 +1.8
151,775 - Ac3H11_4987 0.80 -0.1
151,852 + Ac3H11_4987 0.90 +1.7
151,906 + -0.3
151,906 + +1.3
151,907 - -1.5
151,907 - -0.1
151,907 - +0.5
151,907 - -1.2
151,907 - -0.2
152,055 + -0.2
152,206 - Ac3H11_4988 0.15 +1.5
152,206 - Ac3H11_4988 0.15 -0.2
152,235 + Ac3H11_4988 0.17 -0.7
152,235 + Ac3H11_4988 0.17 -0.6
152,235 + Ac3H11_4988 0.17 -0.1
152,235 + Ac3H11_4988 0.17 +0.5
152,235 + Ac3H11_4988 0.17 -0.2
152,236 - Ac3H11_4988 0.17 +0.7
152,236 - Ac3H11_4988 0.17 +0.4
152,236 - Ac3H11_4988 0.17 +0.2
152,502 + Ac3H11_4988 0.32 -0.9
152,502 + Ac3H11_4988 0.32 +0.7
152,502 + Ac3H11_4988 0.32 -0.9
152,503 - Ac3H11_4988 0.32 -0.3
152,503 - Ac3H11_4988 0.32 -1.0
152,503 - Ac3H11_4988 0.32 -0.7
152,623 - Ac3H11_4988 0.38 +0.1
152,623 - Ac3H11_4988 0.38 -0.5
152,623 - Ac3H11_4988 0.38 +0.2
152,854 - Ac3H11_4988 0.51 +0.7
152,919 + Ac3H11_4988 0.55 -1.2
152,919 + Ac3H11_4988 0.55 -0.7
152,920 - Ac3H11_4988 0.55 -0.3
152,931 + Ac3H11_4988 0.55 +1.1
152,931 + Ac3H11_4988 0.55 -0.9
152,931 + Ac3H11_4988 0.55 -0.3
152,932 - Ac3H11_4988 0.55 -0.3
152,932 - Ac3H11_4988 0.55 -0.3

Or see this region's nucleotide sequence