Experiment: syringaldehyde 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3284 and Ac3H11_3285 are separated by 112 nucleotides Ac3H11_3285 and Ac3H11_3286 are separated by 132 nucleotides Ac3H11_3286 and Ac3H11_3287 are separated by 54 nucleotides
Ac3H11_3284 - Sugar transporter, at 16,980 to 18,344
_3284
Ac3H11_3285 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 18,457 to 19,545
_3285
Ac3H11_3286 - EAL domain protein, at 19,678 to 19,962
_3286
Ac3H11_3287 - EAL domain protein, at 20,017 to 20,502
_3287
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.526 kb on + strand, within Ac3H11_3284 at 17.527 kb on - strand, within Ac3H11_3284 at 17.527 kb on - strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.766 kb on + strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.767 kb on - strand, within Ac3H11_3284 at 17.778 kb on + strand, within Ac3H11_3284 at 17.778 kb on + strand, within Ac3H11_3284 at 17.778 kb on + strand, within Ac3H11_3284 at 17.779 kb on - strand, within Ac3H11_3284 at 17.779 kb on - strand, within Ac3H11_3284 at 17.779 kb on - strand, within Ac3H11_3284 at 17.857 kb on + strand, within Ac3H11_3284 at 17.857 kb on + strand, within Ac3H11_3284 at 17.857 kb on + strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.858 kb on - strand, within Ac3H11_3284 at 17.898 kb on + strand, within Ac3H11_3284 at 17.898 kb on + strand, within Ac3H11_3284 at 17.898 kb on + strand, within Ac3H11_3284 at 17.899 kb on - strand, within Ac3H11_3284 at 17.943 kb on + strand, within Ac3H11_3284 at 17.943 kb on + strand, within Ac3H11_3284 at 17.944 kb on - strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.096 kb on + strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.097 kb on - strand, within Ac3H11_3284 at 18.099 kb on + strand, within Ac3H11_3284 at 18.100 kb on - strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.180 kb on + strand, within Ac3H11_3284 at 18.181 kb on - strand, within Ac3H11_3284 at 18.181 kb on - strand, within Ac3H11_3284 at 18.181 kb on - strand, within Ac3H11_3284 at 18.288 kb on + strand at 18.410 kb on - strand at 18.410 kb on - strand at 18.410 kb on - strand at 18.410 kb on - strand at 18.664 kb on + strand, within Ac3H11_3285 at 18.664 kb on + strand, within Ac3H11_3285 at 18.665 kb on - strand, within Ac3H11_3285 at 18.665 kb on - strand, within Ac3H11_3285 at 18.665 kb on - strand, within Ac3H11_3285 at 18.736 kb on + strand, within Ac3H11_3285 at 18.737 kb on - strand, within Ac3H11_3285 at 18.737 kb on - strand, within Ac3H11_3285 at 18.835 kb on + strand, within Ac3H11_3285 at 18.835 kb on + strand, within Ac3H11_3285 at 18.836 kb on - strand, within Ac3H11_3285 at 18.836 kb on - strand, within Ac3H11_3285 at 19.501 kb on + strand at 19.501 kb on + strand at 19.502 kb on - strand at 19.544 kb on - strand at 19.591 kb on - strand at 19.600 kb on - strand at 19.600 kb on - strand at 19.600 kb on - strand at 19.620 kb on + strand at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.751 kb on + strand, within Ac3H11_3286 at 19.752 kb on - strand, within Ac3H11_3286 at 19.752 kb on - strand, within Ac3H11_3286 at 20.018 kb on + strand at 20.019 kb on - strand at 20.156 kb on + strand, within Ac3H11_3287 at 20.156 kb on + strand, within Ac3H11_3287 at 20.156 kb on + strand, within Ac3H11_3287 at 20.156 kb on + strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.157 kb on - strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.353 kb on + strand, within Ac3H11_3287 at 20.354 kb on - strand, within Ac3H11_3287 at 20.354 kb on - strand, within Ac3H11_3287 at 20.354 kb on - strand, within Ac3H11_3287 at 20.372 kb on + strand, within Ac3H11_3287 at 20.372 kb on + strand, within Ac3H11_3287 at 20.373 kb on - strand, within Ac3H11_3287 at 20.373 kb on - strand, within Ac3H11_3287
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 2.5 mM remove 17,526 + Ac3H11_3284 0.40 -1.2 17,527 - Ac3H11_3284 0.40 -0.1 17,527 - Ac3H11_3284 0.40 +0.3 17,766 + Ac3H11_3284 0.58 +0.1 17,766 + Ac3H11_3284 0.58 -1.6 17,766 + Ac3H11_3284 0.58 +0.4 17,766 + Ac3H11_3284 0.58 -1.0 17,766 + Ac3H11_3284 0.58 -0.0 17,767 - Ac3H11_3284 0.58 +0.3 17,767 - Ac3H11_3284 0.58 -1.0 17,767 - Ac3H11_3284 0.58 -0.8 17,767 - Ac3H11_3284 0.58 -0.1 17,778 + Ac3H11_3284 0.58 -0.2 17,778 + Ac3H11_3284 0.58 +1.9 17,778 + Ac3H11_3284 0.58 -0.8 17,779 - Ac3H11_3284 0.59 -0.3 17,779 - Ac3H11_3284 0.59 +0.4 17,779 - Ac3H11_3284 0.59 +0.2 17,857 + Ac3H11_3284 0.64 -0.5 17,857 + Ac3H11_3284 0.64 -0.4 17,857 + Ac3H11_3284 0.64 +0.5 17,858 - Ac3H11_3284 0.64 -0.8 17,858 - Ac3H11_3284 0.64 +0.3 17,858 - +1.9 17,858 - Ac3H11_3284 0.64 +0.7 17,858 - Ac3H11_3284 0.64 -0.2 17,858 - Ac3H11_3284 0.64 -0.3 17,858 - Ac3H11_3284 0.64 -1.1 17,858 - Ac3H11_3284 0.64 -0.5 17,858 - Ac3H11_3284 0.64 -0.1 17,858 - Ac3H11_3284 0.64 -0.2 17,898 + Ac3H11_3284 0.67 -0.2 17,898 + Ac3H11_3284 0.67 -0.3 17,898 + Ac3H11_3284 0.67 +0.4 17,899 - Ac3H11_3284 0.67 +0.6 17,943 + Ac3H11_3284 0.71 -1.0 17,943 + Ac3H11_3284 0.71 -0.1 17,944 - Ac3H11_3284 0.71 -0.2 18,096 + Ac3H11_3284 0.82 -0.5 18,096 + Ac3H11_3284 0.82 -0.1 18,096 + Ac3H11_3284 0.82 -2.6 18,096 + Ac3H11_3284 0.82 +0.1 18,096 + Ac3H11_3284 0.82 -0.2 18,096 + Ac3H11_3284 0.82 -0.2 18,096 + Ac3H11_3284 0.82 +0.4 18,096 + Ac3H11_3284 0.82 -1.1 18,096 + Ac3H11_3284 0.82 +1.6 18,097 - Ac3H11_3284 0.82 -1.2 18,097 - Ac3H11_3284 0.82 -0.3 18,097 - Ac3H11_3284 0.82 -0.3 18,097 - Ac3H11_3284 0.82 +0.5 18,097 - Ac3H11_3284 0.82 -0.3 18,097 - Ac3H11_3284 0.82 -0.5 18,097 - Ac3H11_3284 0.82 -0.9 18,097 - Ac3H11_3284 0.82 -0.1 18,097 - Ac3H11_3284 0.82 -1.3 18,097 - Ac3H11_3284 0.82 -1.1 18,097 - Ac3H11_3284 0.82 +0.4 18,099 + Ac3H11_3284 0.82 -0.6 18,100 - Ac3H11_3284 0.82 +1.1 18,180 + Ac3H11_3284 0.88 +0.0 18,180 + Ac3H11_3284 0.88 -0.4 18,180 + Ac3H11_3284 0.88 +1.4 18,180 + Ac3H11_3284 0.88 +0.4 18,181 - Ac3H11_3284 0.88 -1.9 18,181 - Ac3H11_3284 0.88 +0.0 18,181 - Ac3H11_3284 0.88 -0.7 18,288 + -0.5 18,410 - +0.8 18,410 - +0.7 18,410 - -0.1 18,410 - +0.6 18,664 + Ac3H11_3285 0.19 +1.1 18,664 + Ac3H11_3285 0.19 +2.0 18,665 - Ac3H11_3285 0.19 +0.2 18,665 - Ac3H11_3285 0.19 +1.5 18,665 - Ac3H11_3285 0.19 -1.0 18,736 + Ac3H11_3285 0.26 +0.5 18,737 - Ac3H11_3285 0.26 +0.1 18,737 - Ac3H11_3285 0.26 +0.3 18,835 + Ac3H11_3285 0.35 +1.0 18,835 + Ac3H11_3285 0.35 +0.6 18,836 - Ac3H11_3285 0.35 +1.0 18,836 - Ac3H11_3285 0.35 -0.0 19,501 + +0.5 19,501 + +0.6 19,502 - +0.4 19,544 - +0.2 19,591 - +0.2 19,600 - +0.4 19,600 - +0.6 19,600 - +1.1 19,620 + +1.1 19,751 + Ac3H11_3286 0.26 -1.8 19,751 + Ac3H11_3286 0.26 -0.4 19,751 + Ac3H11_3286 0.26 +1.2 19,751 + Ac3H11_3286 0.26 -0.9 19,751 + Ac3H11_3286 0.26 -0.0 19,751 + Ac3H11_3286 0.26 -0.5 19,752 - Ac3H11_3286 0.26 -1.2 19,752 - Ac3H11_3286 0.26 +0.4 20,018 + +0.0 20,019 - +0.7 20,156 + Ac3H11_3287 0.29 -1.0 20,156 + Ac3H11_3287 0.29 +0.0 20,156 + Ac3H11_3287 0.29 -0.0 20,156 + Ac3H11_3287 0.29 +0.8 20,157 - Ac3H11_3287 0.29 -0.7 20,157 - Ac3H11_3287 0.29 +0.7 20,157 - Ac3H11_3287 0.29 -0.1 20,157 - Ac3H11_3287 0.29 +0.5 20,157 - Ac3H11_3287 0.29 +0.0 20,353 + Ac3H11_3287 0.69 +0.5 20,353 + Ac3H11_3287 0.69 +0.1 20,353 + Ac3H11_3287 0.69 +0.0 20,353 + Ac3H11_3287 0.69 +0.0 20,353 + Ac3H11_3287 0.69 -0.2 20,354 - Ac3H11_3287 0.69 -1.8 20,354 - Ac3H11_3287 0.69 -0.1 20,354 - Ac3H11_3287 0.69 -0.2 20,372 + Ac3H11_3287 0.73 +0.6 20,372 + Ac3H11_3287 0.73 -0.9 20,373 - Ac3H11_3287 0.73 +0.5 20,373 - Ac3H11_3287 0.73 -0.3
Or see this region's nucleotide sequence