Experiment: syringaldehyde 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3122 and Ac3H11_3123 are separated by 161 nucleotides Ac3H11_3123 and Ac3H11_3124 are separated by 95 nucleotides Ac3H11_3124 and Ac3H11_3125 overlap by 4 nucleotides Ac3H11_3125 and Ac3H11_3126 are separated by 141 nucleotides
Ac3H11_3122 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 23,016 to 25,301
_3122
Ac3H11_3123 - 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF), at 25,463 to 26,443
_3123
Ac3H11_3124 - hypothetical protein, at 26,539 to 26,790
_3124
Ac3H11_3125 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 26,787 to 27,029
_3125
Ac3H11_3126 - Glutamate--cysteine ligase (EC 6.3.2.2), at 27,171 to 28,697
_3126
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.473 kb on - strand, within Ac3H11_3122 at 24.473 kb on - strand, within Ac3H11_3122 at 24.563 kb on - strand, within Ac3H11_3122 at 24.635 kb on - strand, within Ac3H11_3122 at 24.635 kb on - strand, within Ac3H11_3122 at 24.772 kb on + strand, within Ac3H11_3122 at 24.772 kb on + strand, within Ac3H11_3122 at 24.773 kb on - strand, within Ac3H11_3122 at 24.773 kb on - strand, within Ac3H11_3122 at 24.773 kb on - strand, within Ac3H11_3122 at 24.773 kb on - strand, within Ac3H11_3122 at 24.773 kb on - strand, within Ac3H11_3122 at 24.773 kb on - strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.829 kb on + strand, within Ac3H11_3122 at 24.830 kb on - strand, within Ac3H11_3122 at 24.830 kb on - strand, within Ac3H11_3122 at 24.988 kb on + strand, within Ac3H11_3122 at 24.988 kb on + strand, within Ac3H11_3122 at 24.989 kb on - strand, within Ac3H11_3122 at 25.336 kb on - strand at 26.653 kb on + strand, within Ac3H11_3124 at 26.653 kb on + strand, within Ac3H11_3124 at 26.653 kb on + strand, within Ac3H11_3124 at 26.749 kb on + strand, within Ac3H11_3124 at 26.750 kb on - strand, within Ac3H11_3124 at 26.962 kb on + strand, within Ac3H11_3125 at 26.962 kb on + strand, within Ac3H11_3125 at 26.962 kb on + strand, within Ac3H11_3125 at 26.962 kb on + strand, within Ac3H11_3125 at 26.962 kb on + strand, within Ac3H11_3125 at 26.963 kb on - strand, within Ac3H11_3125 at 26.963 kb on - strand, within Ac3H11_3125 at 26.963 kb on - strand, within Ac3H11_3125 at 26.963 kb on - strand, within Ac3H11_3125 at 26.963 kb on - strand, within Ac3H11_3125 at 26.991 kb on + strand, within Ac3H11_3125 at 27.019 kb on + strand at 27.107 kb on + strand at 27.107 kb on + strand at 27.107 kb on + strand at 27.108 kb on - strand at 27.108 kb on - strand at 27.108 kb on - strand at 27.108 kb on - strand at 27.123 kb on + strand at 27.123 kb on + strand at 27.123 kb on + strand at 27.123 kb on + strand at 27.123 kb on + strand at 27.123 kb on + strand at 27.123 kb on + strand at 27.124 kb on - strand at 27.124 kb on - strand at 27.124 kb on - strand at 27.124 kb on - strand at 27.124 kb on - strand at 27.124 kb on - strand at 27.196 kb on + strand at 27.196 kb on + strand at 27.196 kb on + strand at 27.196 kb on + strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.197 kb on - strand at 27.283 kb on + strand at 27.283 kb on + strand at 27.283 kb on + strand at 27.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 2.5 mM remove 24,473 - Ac3H11_3122 0.64 +2.3 24,473 - Ac3H11_3122 0.64 -1.1 24,563 - Ac3H11_3122 0.68 -0.3 24,635 - Ac3H11_3122 0.71 +0.7 24,635 - Ac3H11_3122 0.71 -0.2 24,772 + Ac3H11_3122 0.77 +0.7 24,772 + Ac3H11_3122 0.77 -0.6 24,773 - Ac3H11_3122 0.77 -1.1 24,773 - Ac3H11_3122 0.77 -0.4 24,773 - Ac3H11_3122 0.77 -0.1 24,773 - Ac3H11_3122 0.77 +0.1 24,773 - Ac3H11_3122 0.77 +1.0 24,773 - Ac3H11_3122 0.77 +0.6 24,829 + Ac3H11_3122 0.79 -0.0 24,829 + Ac3H11_3122 0.79 -2.1 24,829 + Ac3H11_3122 0.79 -0.0 24,829 + Ac3H11_3122 0.79 +1.0 24,829 + Ac3H11_3122 0.79 -0.1 24,829 + Ac3H11_3122 0.79 -0.3 24,829 + Ac3H11_3122 0.79 -0.5 24,830 - Ac3H11_3122 0.79 +1.1 24,830 - Ac3H11_3122 0.79 +0.4 24,988 + Ac3H11_3122 0.86 -0.8 24,988 + Ac3H11_3122 0.86 +0.8 24,989 - Ac3H11_3122 0.86 -1.1 25,336 - +0.9 26,653 + Ac3H11_3124 0.45 +0.4 26,653 + Ac3H11_3124 0.45 +1.1 26,653 + Ac3H11_3124 0.45 +0.3 26,749 + Ac3H11_3124 0.83 +0.4 26,750 - Ac3H11_3124 0.84 -0.2 26,962 + Ac3H11_3125 0.72 +0.5 26,962 + Ac3H11_3125 0.72 -0.0 26,962 + Ac3H11_3125 0.72 +1.3 26,962 + Ac3H11_3125 0.72 +0.7 26,962 + Ac3H11_3125 0.72 +0.2 26,963 - Ac3H11_3125 0.72 +0.4 26,963 - Ac3H11_3125 0.72 +0.9 26,963 - Ac3H11_3125 0.72 +1.0 26,963 - Ac3H11_3125 0.72 +0.0 26,963 - Ac3H11_3125 0.72 +0.4 26,991 + Ac3H11_3125 0.84 -1.9 27,019 + -0.1 27,107 + -0.0 27,107 + +0.9 27,107 + +1.2 27,108 - +0.1 27,108 - +0.4 27,108 - +0.5 27,108 - +0.3 27,123 + +0.8 27,123 + +0.5 27,123 + +1.4 27,123 + -0.3 27,123 + -0.2 27,123 + -0.0 27,123 + -0.1 27,124 - +0.7 27,124 - -1.5 27,124 - -1.1 27,124 - +0.9 27,124 - -0.2 27,124 - +0.1 27,196 + -0.8 27,196 + -0.5 27,196 + +0.3 27,196 + -1.9 27,197 - +0.0 27,197 - +1.7 27,197 - +2.0 27,197 - -1.1 27,197 - -0.3 27,197 - -1.7 27,197 - +1.1 27,197 - +0.3 27,197 - +0.9 27,197 - -0.1 27,197 - -0.1 27,197 - -0.3 27,197 - -1.2 27,197 - -1.5 27,283 + +1.4 27,283 + +1.7 27,283 + -0.5 27,283 + -0.0
Or see this region's nucleotide sequence