Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20485

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20480 and AZOBR_RS20485 are separated by 8 nucleotidesAZOBR_RS20485 and AZOBR_RS20490 are separated by 276 nucleotides AZOBR_RS20480: AZOBR_RS20480 - chorismate mutase, at 1,360,384 to 1,361,298 _RS20480 AZOBR_RS20485: AZOBR_RS20485 - histidinol-phosphate aminotransferase [EC:2.6.1.9] (from data), at 1,361,307 to 1,362,401 _RS20485 AZOBR_RS20490: AZOBR_RS20490 - cyclohexadienyl dehydrogenase, at 1,362,678 to 1,363,583 _RS20490 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1360.334 kb on + strandat 1360.334 kb on + strandat 1361.448 kb on + strand, within AZOBR_RS20485at 1361.449 kb on - strand, within AZOBR_RS20485at 1361.449 kb on - strand, within AZOBR_RS20485at 1361.449 kb on - strand, within AZOBR_RS20485at 1361.599 kb on - strand, within AZOBR_RS20485at 1361.625 kb on + strand, within AZOBR_RS20485at 1361.650 kb on - strand, within AZOBR_RS20485at 1361.796 kb on + strand, within AZOBR_RS20485at 1361.796 kb on + strand, within AZOBR_RS20485at 1361.797 kb on - strand, within AZOBR_RS20485at 1361.880 kb on + strand, within AZOBR_RS20485at 1361.881 kb on - strand, within AZOBR_RS20485at 1361.881 kb on - strand, within AZOBR_RS20485at 1361.898 kb on + strand, within AZOBR_RS20485at 1361.899 kb on - strand, within AZOBR_RS20485at 1362.309 kb on + strandat 1362.309 kb on + strandat 1362.309 kb on + strandat 1362.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,360,334 + -1.1
1,360,334 + -0.1
1,361,448 + AZOBR_RS20485 0.13 -4.7
1,361,449 - AZOBR_RS20485 0.13 -5.9
1,361,449 - AZOBR_RS20485 0.13 -3.3
1,361,449 - AZOBR_RS20485 0.13 -5.0
1,361,599 - AZOBR_RS20485 0.27 -5.7
1,361,625 + AZOBR_RS20485 0.29 -4.1
1,361,650 - AZOBR_RS20485 0.31 -3.1
1,361,796 + AZOBR_RS20485 0.45 -4.4
1,361,796 + AZOBR_RS20485 0.45 -6.2
1,361,797 - AZOBR_RS20485 0.45 -6.0
1,361,880 + AZOBR_RS20485 0.52 -5.5
1,361,881 - AZOBR_RS20485 0.52 -0.5
1,361,881 - AZOBR_RS20485 0.52 -3.4
1,361,898 + AZOBR_RS20485 0.54 -1.7
1,361,899 - AZOBR_RS20485 0.54 -2.3
1,362,309 + -4.7
1,362,309 + -1.6
1,362,309 + -0.5
1,362,631 + -1.3

Or see this region's nucleotide sequence