Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21330

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21325 and ABZR86_RS21330 are separated by 214 nucleotidesABZR86_RS21330 and ABZR86_RS21335 are separated by 235 nucleotidesABZR86_RS21335 and ABZR86_RS21340 are separated by 121 nucleotides ABZR86_RS21325: ABZR86_RS21325 - ABC transporter ATP-binding protein, at 231,373 to 232,326 _RS21325 ABZR86_RS21330: ABZR86_RS21330 - polyketide cyclase, at 232,541 to 233,893 _RS21330 ABZR86_RS21335: ABZR86_RS21335 - response regulator transcription factor, at 234,129 to 234,770 _RS21335 ABZR86_RS21340: ABZR86_RS21340 - sensor histidine kinase, at 234,892 to 236,121 _RS21340 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1at 231.657 kb on - strand, within ABZR86_RS21325at 231.657 kb on - strand, within ABZR86_RS21325at 231.946 kb on - strand, within ABZR86_RS21325at 232.240 kb on + strandat 232.240 kb on + strandat 232.241 kb on - strandat 232.241 kb on - strandat 232.392 kb on + strandat 232.392 kb on + strandat 232.392 kb on + strandat 232.392 kb on + strandat 232.392 kb on + strandat 232.392 kb on + strandat 232.393 kb on - strandat 232.393 kb on - strandat 232.478 kb on - strandat 232.529 kb on + strandat 232.530 kb on - strandat 232.530 kb on - strandat 232.543 kb on - strandat 232.692 kb on + strand, within ABZR86_RS21330at 232.692 kb on + strand, within ABZR86_RS21330at 232.692 kb on + strand, within ABZR86_RS21330at 232.761 kb on + strand, within ABZR86_RS21330at 232.761 kb on + strand, within ABZR86_RS21330at 232.791 kb on + strand, within ABZR86_RS21330at 232.791 kb on + strand, within ABZR86_RS21330at 232.791 kb on + strand, within ABZR86_RS21330at 232.791 kb on + strand, within ABZR86_RS21330at 232.792 kb on - strand, within ABZR86_RS21330at 232.792 kb on - strand, within ABZR86_RS21330at 232.809 kb on + strand, within ABZR86_RS21330at 232.809 kb on + strand, within ABZR86_RS21330at 233.100 kb on + strand, within ABZR86_RS21330at 233.100 kb on + strand, within ABZR86_RS21330at 233.101 kb on - strand, within ABZR86_RS21330at 233.101 kb on - strand, within ABZR86_RS21330at 233.115 kb on + strand, within ABZR86_RS21330at 233.115 kb on + strand, within ABZR86_RS21330at 233.127 kb on + strand, within ABZR86_RS21330at 233.127 kb on + strand, within ABZR86_RS21330at 233.127 kb on + strand, within ABZR86_RS21330at 233.127 kb on + strand, within ABZR86_RS21330at 233.127 kb on + strand, within ABZR86_RS21330at 233.127 kb on + strand, within ABZR86_RS21330at 233.128 kb on - strand, within ABZR86_RS21330at 233.128 kb on - strand, within ABZR86_RS21330at 233.128 kb on - strand, within ABZR86_RS21330at 233.128 kb on - strand, within ABZR86_RS21330at 233.289 kb on + strand, within ABZR86_RS21330at 233.289 kb on + strand, within ABZR86_RS21330at 233.289 kb on + strand, within ABZR86_RS21330at 233.290 kb on - strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.391 kb on + strand, within ABZR86_RS21330at 233.392 kb on - strand, within ABZR86_RS21330at 233.392 kb on - strand, within ABZR86_RS21330at 233.392 kb on - strand, within ABZR86_RS21330at 233.392 kb on - strand, within ABZR86_RS21330at 233.392 kb on - strand, within ABZR86_RS21330at 233.427 kb on + strand, within ABZR86_RS21330at 233.428 kb on - strand, within ABZR86_RS21330at 233.439 kb on + strand, within ABZR86_RS21330at 233.439 kb on + strand, within ABZR86_RS21330at 233.439 kb on + strand, within ABZR86_RS21330at 233.440 kb on - strand, within ABZR86_RS21330at 233.440 kb on - strand, within ABZR86_RS21330at 233.440 kb on - strand, within ABZR86_RS21330at 233.440 kb on - strand, within ABZR86_RS21330at 233.440 kb on - strand, within ABZR86_RS21330at 233.667 kb on + strand, within ABZR86_RS21330at 233.668 kb on - strand, within ABZR86_RS21330at 233.760 kb on + strandat 233.761 kb on - strandat 233.861 kb on + strandat 233.862 kb on - strandat 233.970 kb on + strandat 233.971 kb on - strandat 234.130 kb on + strandat 234.131 kb on - strandat 234.131 kb on - strandat 234.469 kb on + strand, within ABZR86_RS21335at 234.825 kb on + strandat 234.825 kb on + strandat 234.825 kb on + strandat 234.826 kb on - strandat 234.826 kb on - strandat 234.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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231,657 - ABZR86_RS21325 0.30 -0.9
231,657 - ABZR86_RS21325 0.30 -1.5
231,946 - ABZR86_RS21325 0.60 -0.9
232,240 + -2.3
232,240 + -1.1
232,241 - -0.2
232,241 - +0.3
232,392 + +0.1
232,392 + -1.4
232,392 + -0.4
232,392 + +1.4
232,392 + -0.0
232,392 + -1.1
232,393 - +0.0
232,393 - +0.9
232,478 - +0.4
232,529 + +0.3
232,530 - -0.1
232,530 - +0.1
232,543 - +0.1
232,692 + ABZR86_RS21330 0.11 -0.1
232,692 + ABZR86_RS21330 0.11 -0.5
232,692 + ABZR86_RS21330 0.11 -0.0
232,761 + ABZR86_RS21330 0.16 +1.1
232,761 + ABZR86_RS21330 0.16 -1.3
232,791 + ABZR86_RS21330 0.18 +0.3
232,791 + ABZR86_RS21330 0.18 +0.3
232,791 + ABZR86_RS21330 0.18 -0.1
232,791 + ABZR86_RS21330 0.18 -2.5
232,792 - ABZR86_RS21330 0.19 +0.5
232,792 - ABZR86_RS21330 0.19 +0.1
232,809 + ABZR86_RS21330 0.20 -0.3
232,809 + ABZR86_RS21330 0.20 -0.5
233,100 + ABZR86_RS21330 0.41 -0.4
233,100 + ABZR86_RS21330 0.41 -0.3
233,101 - ABZR86_RS21330 0.41 -0.5
233,101 - ABZR86_RS21330 0.41 -0.4
233,115 + ABZR86_RS21330 0.42 +0.1
233,115 + ABZR86_RS21330 0.42 +1.1
233,127 + ABZR86_RS21330 0.43 +0.3
233,127 + ABZR86_RS21330 0.43 +0.6
233,127 + ABZR86_RS21330 0.43 -1.5
233,127 + ABZR86_RS21330 0.43 -1.2
233,127 + ABZR86_RS21330 0.43 +0.0
233,127 + ABZR86_RS21330 0.43 -0.2
233,128 - ABZR86_RS21330 0.43 +0.2
233,128 - ABZR86_RS21330 0.43 -0.4
233,128 - ABZR86_RS21330 0.43 -0.1
233,128 - ABZR86_RS21330 0.43 +0.5
233,289 + ABZR86_RS21330 0.55 -0.4
233,289 + ABZR86_RS21330 0.55 -1.6
233,289 + ABZR86_RS21330 0.55 -1.0
233,290 - ABZR86_RS21330 0.55 -0.2
233,391 + ABZR86_RS21330 0.63 -1.2
233,391 + ABZR86_RS21330 0.63 -0.8
233,391 + ABZR86_RS21330 0.63 -0.7
233,391 + ABZR86_RS21330 0.63 -0.7
233,391 + ABZR86_RS21330 0.63 +0.0
233,391 + ABZR86_RS21330 0.63 -0.9
233,391 + ABZR86_RS21330 0.63 +0.8
233,392 - ABZR86_RS21330 0.63 -0.6
233,392 - ABZR86_RS21330 0.63 -0.8
233,392 - ABZR86_RS21330 0.63 +0.3
233,392 - ABZR86_RS21330 0.63 -0.8
233,392 - ABZR86_RS21330 0.63 +0.3
233,427 + ABZR86_RS21330 0.65 +0.4
233,428 - ABZR86_RS21330 0.66 -0.4
233,439 + ABZR86_RS21330 0.66 -0.5
233,439 + ABZR86_RS21330 0.66 +0.3
233,439 + ABZR86_RS21330 0.66 -0.4
233,440 - ABZR86_RS21330 0.66 -0.7
233,440 - ABZR86_RS21330 0.66 -0.7
233,440 - ABZR86_RS21330 0.66 -0.8
233,440 - ABZR86_RS21330 0.66 -0.4
233,440 - ABZR86_RS21330 0.66 -0.5
233,667 + ABZR86_RS21330 0.83 -0.8
233,668 - ABZR86_RS21330 0.83 -0.9
233,760 + +0.9
233,761 - +0.2
233,861 + -1.1
233,862 - -0.3
233,970 + -0.7
233,971 - +0.1
234,130 + -0.2
234,131 - +0.3
234,131 - +0.1
234,469 + ABZR86_RS21335 0.53 -0.0
234,825 + +0.1
234,825 + +0.1
234,825 + +0.1
234,826 - +0.5
234,826 - +0.3
234,826 - +0.5

Or see this region's nucleotide sequence