Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21035 and ABZR86_RS21040 are separated by 34 nucleotides ABZR86_RS21040 and ABZR86_RS21045 overlap by 4 nucleotides ABZR86_RS21045 and ABZR86_RS21050 are separated by 49 nucleotides ABZR86_RS21050 and ABZR86_RS21055 are separated by 41 nucleotides ABZR86_RS21055 and ABZR86_RS21060 are separated by 526 nucleotides
ABZR86_RS21035: ABZR86_RS21035 - organic hydroperoxide resistance protein, at 179,192 to 179,605
_RS21035
ABZR86_RS21040: ABZR86_RS21040 - DUF2282 domain-containing protein, at 179,640 to 179,918
_RS21040
ABZR86_RS21045: ABZR86_RS21045 - DoxX family protein, at 179,915 to 180,346
_RS21045
ABZR86_RS21050: ABZR86_RS21050 - alpha/beta hydrolase, at 180,396 to 181,163
_RS21050
ABZR86_RS21055: ABZR86_RS21055 - hypothetical protein, at 181,205 to 181,489
_RS21055
ABZR86_RS21060: ABZR86_RS21060 - DUF692 domain-containing protein, at 182,016 to 182,861
_RS21060
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1 at 179.463 kb on - strand, within ABZR86_RS21035 at 179.893 kb on - strand at 180.065 kb on + strand, within ABZR86_RS21045 at 180.066 kb on - strand, within ABZR86_RS21045 at 180.087 kb on - strand, within ABZR86_RS21045 at 180.296 kb on + strand, within ABZR86_RS21045 at 180.409 kb on + strand at 180.410 kb on - strand at 180.410 kb on - strand at 180.574 kb on - strand, within ABZR86_RS21050 at 180.574 kb on - strand, within ABZR86_RS21050 at 180.701 kb on + strand, within ABZR86_RS21050 at 180.702 kb on - strand, within ABZR86_RS21050 at 180.741 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.846 kb on + strand, within ABZR86_RS21050 at 180.847 kb on - strand, within ABZR86_RS21050 at 180.847 kb on - strand, within ABZR86_RS21050 at 180.847 kb on - strand, within ABZR86_RS21050 at 181.050 kb on + strand, within ABZR86_RS21050 at 181.101 kb on + strand at 181.101 kb on + strand at 181.101 kb on + strand at 181.101 kb on + strand at 181.102 kb on - strand at 181.102 kb on - strand at 181.102 kb on - strand at 181.102 kb on - strand at 181.487 kb on + strand at 181.487 kb on + strand at 181.487 kb on + strand at 181.488 kb on - strand at 181.488 kb on - strand at 181.488 kb on - strand at 181.492 kb on - strand at 181.492 kb on - strand at 181.509 kb on + strand at 181.510 kb on - strand at 181.510 kb on - strand at 181.579 kb on - strand at 181.579 kb on - strand at 182.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 179,463 - ABZR86_RS21035 0.65 -0.1 179,893 - +0.5 180,065 + ABZR86_RS21045 0.35 -1.4 180,066 - ABZR86_RS21045 0.35 -0.0 180,087 - ABZR86_RS21045 0.40 -0.4 180,296 + ABZR86_RS21045 0.88 +0.4 180,409 + +0.7 180,410 - +0.0 180,410 - -0.5 180,574 - ABZR86_RS21050 0.23 +0.2 180,574 - ABZR86_RS21050 0.23 -0.5 180,701 + ABZR86_RS21050 0.40 -1.2 180,702 - ABZR86_RS21050 0.40 +0.4 180,741 + ABZR86_RS21050 0.45 +0.3 180,846 + ABZR86_RS21050 0.59 +0.2 180,846 + ABZR86_RS21050 0.59 -0.2 180,846 + ABZR86_RS21050 0.59 -1.1 180,846 + ABZR86_RS21050 0.59 -0.8 180,847 - ABZR86_RS21050 0.59 -0.2 180,847 - ABZR86_RS21050 0.59 +0.2 180,847 - ABZR86_RS21050 0.59 -0.2 181,050 + ABZR86_RS21050 0.85 +0.4 181,101 + -0.2 181,101 + -0.3 181,101 + -0.1 181,101 + -0.5 181,102 - -0.1 181,102 - +0.8 181,102 - +0.6 181,102 - +0.9 181,487 + -0.4 181,487 + -0.1 181,487 + +0.4 181,488 - -0.2 181,488 - +0.3 181,488 - +0.3 181,492 - +0.3 181,492 - -0.7 181,509 + +0.5 181,510 - -0.8 181,510 - -0.0 181,579 - -0.2 181,579 - -0.2 182,073 + -0.1
Or see this region's nucleotide sequence