Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20490

Experiment: A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS20485 and ABZR86_RS20490 overlap by 4 nucleotidesABZR86_RS20490 and ABZR86_RS20495 are separated by 1 nucleotides ABZR86_RS20485: ABZR86_RS20485 - FAD/NAD(P)-binding oxidoreductase, at 36,278 to 37,564 _RS20485 ABZR86_RS20490: ABZR86_RS20490 - dihydrodipicolinate synthase family protein, at 37,561 to 38,466 _RS20490 ABZR86_RS20495: ABZR86_RS20495 - aldehyde dehydrogenase family protein, at 38,468 to 40,069 _RS20495 Position (kb) 37 38 39Strain fitness (log2 ratio) -1 0 1at 37.891 kb on + strand, within ABZR86_RS20490at 37.892 kb on - strand, within ABZR86_RS20490at 37.892 kb on - strand, within ABZR86_RS20490at 37.897 kb on + strand, within ABZR86_RS20490at 37.972 kb on + strand, within ABZR86_RS20490at 37.972 kb on + strand, within ABZR86_RS20490at 37.973 kb on - strand, within ABZR86_RS20490at 38.702 kb on + strand, within ABZR86_RS20495at 38.849 kb on + strand, within ABZR86_RS20495at 38.849 kb on + strand, within ABZR86_RS20495at 38.850 kb on - strand, within ABZR86_RS20495at 38.850 kb on - strand, within ABZR86_RS20495at 39.122 kb on + strand, within ABZR86_RS20495at 39.122 kb on + strand, within ABZR86_RS20495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
remove
37,891 + ABZR86_RS20490 0.36 -0.7
37,892 - ABZR86_RS20490 0.37 -0.1
37,892 - ABZR86_RS20490 0.37 -0.7
37,897 + ABZR86_RS20490 0.37 +0.1
37,972 + ABZR86_RS20490 0.45 +0.9
37,972 + ABZR86_RS20490 0.45 +0.5
37,973 - ABZR86_RS20490 0.45 -0.6
38,702 + ABZR86_RS20495 0.15 -0.0
38,849 + ABZR86_RS20495 0.24 +0.9
38,849 + ABZR86_RS20495 0.24 +0.2
38,850 - ABZR86_RS20495 0.24 -0.0
38,850 - ABZR86_RS20495 0.24 +0.9
39,122 + ABZR86_RS20495 0.41 +0.3
39,122 + ABZR86_RS20495 0.41 +1.6

Or see this region's nucleotide sequence