Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS15880 and ABZR86_RS15885 overlap by 8 nucleotides ABZR86_RS15885 and ABZR86_RS15890 are separated by 103 nucleotides ABZR86_RS15890 and ABZR86_RS15895 are separated by 103 nucleotides
ABZR86_RS15880: ABZR86_RS15880 - MFS transporter, at 3,575,086 to 3,576,633
_RS15880
ABZR86_RS15885: ABZR86_RS15885 - 3-oxoacyl-ACP reductase family protein, at 3,576,626 to 3,577,366
_RS15885
ABZR86_RS15890: ABZR86_RS15890 - TetR/AcrR family transcriptional regulator, at 3,577,470 to 3,578,096
_RS15890
ABZR86_RS15895: ABZR86_RS15895 - 4-hydroxybenzoate octaprenyltransferase, at 3,578,200 to 3,579,210
_RS15895
Position (kb) 3576
3577
3578 Strain fitness (log2 ratio) -1
0
1 at 3575.780 kb on + strand, within ABZR86_RS15880 at 3575.781 kb on - strand, within ABZR86_RS15880 at 3575.781 kb on - strand, within ABZR86_RS15880 at 3575.781 kb on - strand, within ABZR86_RS15880 at 3575.781 kb on - strand, within ABZR86_RS15880 at 3575.883 kb on - strand, within ABZR86_RS15880 at 3576.376 kb on - strand, within ABZR86_RS15880 at 3576.979 kb on + strand, within ABZR86_RS15885 at 3577.185 kb on + strand, within ABZR86_RS15885 at 3577.440 kb on - strand at 3577.604 kb on + strand, within ABZR86_RS15890 at 3577.624 kb on - strand, within ABZR86_RS15890 at 3577.624 kb on - strand, within ABZR86_RS15890 at 3577.674 kb on + strand, within ABZR86_RS15890 at 3577.675 kb on - strand, within ABZR86_RS15890 at 3577.965 kb on + strand, within ABZR86_RS15890 at 3577.965 kb on + strand, within ABZR86_RS15890 at 3578.182 kb on + strand at 3578.202 kb on - strand at 3578.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,575,780 + ABZR86_RS15880 0.45 +0.5 3,575,781 - ABZR86_RS15880 0.45 +0.0 3,575,781 - ABZR86_RS15880 0.45 -0.0 3,575,781 - ABZR86_RS15880 0.45 -0.2 3,575,781 - ABZR86_RS15880 0.45 +0.1 3,575,883 - ABZR86_RS15880 0.51 -0.5 3,576,376 - ABZR86_RS15880 0.83 +0.2 3,576,979 + ABZR86_RS15885 0.48 +0.5 3,577,185 + ABZR86_RS15885 0.75 -0.4 3,577,440 - +0.3 3,577,604 + ABZR86_RS15890 0.21 +0.3 3,577,624 - ABZR86_RS15890 0.25 +0.1 3,577,624 - ABZR86_RS15890 0.25 +0.2 3,577,674 + ABZR86_RS15890 0.33 -0.4 3,577,675 - ABZR86_RS15890 0.33 -0.2 3,577,965 + ABZR86_RS15890 0.79 -0.4 3,577,965 + ABZR86_RS15890 0.79 -1.3 3,578,182 + +0.3 3,578,202 - +0.4 3,578,202 - -0.1
Or see this region's nucleotide sequence