Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15230

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15225 and ABZR86_RS15230 are separated by 46 nucleotidesABZR86_RS15230 and ABZR86_RS15235 are separated by 12 nucleotides ABZR86_RS15225: ABZR86_RS15225 - PA0069 family radical SAM protein, at 3,430,272 to 3,431,351 _RS15225 ABZR86_RS15230: ABZR86_RS15230 - PA0069 family radical SAM protein, at 3,431,398 to 3,432,507 _RS15230 ABZR86_RS15235: ABZR86_RS15235 - type II toxin-antitoxin system HipA family toxin YjjJ, at 3,432,520 to 3,433,893 _RS15235 Position (kb) 3431 3432 3433Strain fitness (log2 ratio) -1 0 1at 3430.497 kb on + strand, within ABZR86_RS15225at 3430.498 kb on - strand, within ABZR86_RS15225at 3430.498 kb on - strand, within ABZR86_RS15225at 3430.524 kb on + strand, within ABZR86_RS15225at 3430.524 kb on + strand, within ABZR86_RS15225at 3430.551 kb on + strand, within ABZR86_RS15225at 3430.551 kb on + strand, within ABZR86_RS15225at 3430.648 kb on - strand, within ABZR86_RS15225at 3430.680 kb on - strand, within ABZR86_RS15225at 3430.689 kb on + strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.690 kb on - strand, within ABZR86_RS15225at 3430.711 kb on - strand, within ABZR86_RS15225at 3430.711 kb on - strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.845 kb on + strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3430.846 kb on - strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.058 kb on + strand, within ABZR86_RS15225at 3431.059 kb on - strand, within ABZR86_RS15225at 3431.121 kb on + strand, within ABZR86_RS15225at 3431.181 kb on + strand, within ABZR86_RS15225at 3431.181 kb on + strand, within ABZR86_RS15225at 3431.259 kb on + strandat 3431.260 kb on - strandat 3431.260 kb on - strandat 3431.260 kb on - strandat 3431.260 kb on - strandat 3431.349 kb on + strandat 3431.674 kb on + strand, within ABZR86_RS15230at 3431.674 kb on + strand, within ABZR86_RS15230at 3431.674 kb on + strand, within ABZR86_RS15230at 3431.674 kb on + strand, within ABZR86_RS15230at 3431.675 kb on - strand, within ABZR86_RS15230at 3431.675 kb on - strand, within ABZR86_RS15230at 3431.675 kb on - strand, within ABZR86_RS15230at 3431.701 kb on + strand, within ABZR86_RS15230at 3431.701 kb on + strand, within ABZR86_RS15230at 3431.702 kb on - strand, within ABZR86_RS15230at 3431.702 kb on - strand, within ABZR86_RS15230at 3431.798 kb on - strand, within ABZR86_RS15230at 3431.798 kb on - strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3431.839 kb on + strand, within ABZR86_RS15230at 3432.208 kb on + strand, within ABZR86_RS15230at 3432.209 kb on - strand, within ABZR86_RS15230at 3432.331 kb on + strand, within ABZR86_RS15230at 3432.331 kb on + strand, within ABZR86_RS15230at 3432.332 kb on - strand, within ABZR86_RS15230at 3432.454 kb on - strandat 3432.454 kb on - strandat 3432.454 kb on - strandat 3432.454 kb on - strandat 3432.665 kb on - strand, within ABZR86_RS15235at 3432.752 kb on + strand, within ABZR86_RS15235at 3433.293 kb on - strand, within ABZR86_RS15235

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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3,430,497 + ABZR86_RS15225 0.21 -0.2
3,430,498 - ABZR86_RS15225 0.21 +0.1
3,430,498 - ABZR86_RS15225 0.21 -0.9
3,430,524 + ABZR86_RS15225 0.23 +0.0
3,430,524 + ABZR86_RS15225 0.23 +0.1
3,430,551 + ABZR86_RS15225 0.26 +0.0
3,430,551 + ABZR86_RS15225 0.26 +0.4
3,430,648 - ABZR86_RS15225 0.35 +0.6
3,430,680 - ABZR86_RS15225 0.38 -0.5
3,430,689 + ABZR86_RS15225 0.39 -0.4
3,430,690 - ABZR86_RS15225 0.39 +0.1
3,430,690 - ABZR86_RS15225 0.39 -0.6
3,430,690 - ABZR86_RS15225 0.39 -0.1
3,430,690 - ABZR86_RS15225 0.39 -0.0
3,430,711 - ABZR86_RS15225 0.41 +1.2
3,430,711 - ABZR86_RS15225 0.41 -0.5
3,430,845 + ABZR86_RS15225 0.53 +0.2
3,430,845 + ABZR86_RS15225 0.53 +0.2
3,430,845 + ABZR86_RS15225 0.53 -0.2
3,430,845 + ABZR86_RS15225 0.53 -0.2
3,430,845 + ABZR86_RS15225 0.53 +0.2
3,430,845 + ABZR86_RS15225 0.53 -1.5
3,430,846 - ABZR86_RS15225 0.53 +0.6
3,430,846 - ABZR86_RS15225 0.53 -0.3
3,430,846 - ABZR86_RS15225 0.53 +0.3
3,430,846 - ABZR86_RS15225 0.53 +0.4
3,430,846 - ABZR86_RS15225 0.53 -0.8
3,430,846 - ABZR86_RS15225 0.53 -0.5
3,430,846 - ABZR86_RS15225 0.53 -0.5
3,431,058 + ABZR86_RS15225 0.73 +0.1
3,431,058 + ABZR86_RS15225 0.73 -0.4
3,431,058 + ABZR86_RS15225 0.73 -1.0
3,431,058 + ABZR86_RS15225 0.73 -0.4
3,431,058 + ABZR86_RS15225 0.73 -0.7
3,431,059 - ABZR86_RS15225 0.73 -0.4
3,431,121 + ABZR86_RS15225 0.79 +0.5
3,431,181 + ABZR86_RS15225 0.84 -0.1
3,431,181 + ABZR86_RS15225 0.84 -1.1
3,431,259 + -0.3
3,431,260 - +0.6
3,431,260 - +0.6
3,431,260 - +0.0
3,431,260 - +0.3
3,431,349 + -0.3
3,431,674 + ABZR86_RS15230 0.25 -0.4
3,431,674 + ABZR86_RS15230 0.25 -0.2
3,431,674 + ABZR86_RS15230 0.25 -0.2
3,431,674 + ABZR86_RS15230 0.25 +0.0
3,431,675 - ABZR86_RS15230 0.25 -0.2
3,431,675 - ABZR86_RS15230 0.25 +0.8
3,431,675 - ABZR86_RS15230 0.25 -0.2
3,431,701 + ABZR86_RS15230 0.27 +0.4
3,431,701 + ABZR86_RS15230 0.27 +0.2
3,431,702 - ABZR86_RS15230 0.27 -0.0
3,431,702 - ABZR86_RS15230 0.27 +0.5
3,431,798 - ABZR86_RS15230 0.36 -0.7
3,431,798 - ABZR86_RS15230 0.36 -0.0
3,431,839 + ABZR86_RS15230 0.40 -0.9
3,431,839 + ABZR86_RS15230 0.40 +0.7
3,431,839 + ABZR86_RS15230 0.40 -0.2
3,431,839 + ABZR86_RS15230 0.40 +0.2
3,432,208 + ABZR86_RS15230 0.73 +0.5
3,432,209 - ABZR86_RS15230 0.73 -0.7
3,432,331 + ABZR86_RS15230 0.84 -0.1
3,432,331 + ABZR86_RS15230 0.84 +0.9
3,432,332 - ABZR86_RS15230 0.84 +0.4
3,432,454 - +1.6
3,432,454 - +0.1
3,432,454 - -0.0
3,432,454 - -0.5
3,432,665 - ABZR86_RS15235 0.11 +0.9
3,432,752 + ABZR86_RS15235 0.17 -0.3
3,433,293 - ABZR86_RS15235 0.56 +1.1

Or see this region's nucleotide sequence