Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02520 and ABZR86_RS02525 overlap by 4 nucleotides ABZR86_RS02525 and ABZR86_RS02530 overlap by 1 nucleotides ABZR86_RS02530 and ABZR86_RS02535 overlap by 4 nucleotides ABZR86_RS02535 and ABZR86_RS02540 overlap by 4 nucleotides ABZR86_RS02540 and ABZR86_RS02545 overlap by 4 nucleotides
ABZR86_RS02520: ABZR86_RS02520 - DEAD/DEAH box helicase, at 515,870 to 517,621
_RS02520
ABZR86_RS02525: ABZR86_RS02525 - hypothetical protein, at 517,618 to 518,376
_RS02525
ABZR86_RS02530: ABZR86_RS02530 - hypothetical protein, at 518,376 to 518,795
_RS02530
ABZR86_RS02535: ABZR86_RS02535 - hypothetical protein, at 518,792 to 519,040
_RS02535
ABZR86_RS02540: ABZR86_RS02540 - hypothetical protein, at 519,037 to 519,300
_RS02540
ABZR86_RS02545: ABZR86_RS02545 - Ref family recombination enhancement nuclease, at 519,297 to 519,848
_RS02545
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1 at 516.625 kb on + strand, within ABZR86_RS02520 at 516.625 kb on + strand, within ABZR86_RS02520 at 516.626 kb on - strand, within ABZR86_RS02520 at 516.626 kb on - strand, within ABZR86_RS02520 at 516.650 kb on + strand, within ABZR86_RS02520 at 516.650 kb on + strand, within ABZR86_RS02520 at 516.651 kb on - strand, within ABZR86_RS02520 at 516.656 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.713 kb on + strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.714 kb on - strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.794 kb on + strand, within ABZR86_RS02520 at 516.795 kb on - strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.118 kb on + strand, within ABZR86_RS02520 at 517.119 kb on - strand, within ABZR86_RS02520 at 517.119 kb on - strand, within ABZR86_RS02520 at 517.119 kb on - strand, within ABZR86_RS02520 at 517.163 kb on + strand, within ABZR86_RS02520 at 517.163 kb on + strand, within ABZR86_RS02520 at 517.163 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.628 kb on + strand at 517.628 kb on + strand at 517.684 kb on + strand at 517.684 kb on + strand at 517.685 kb on - strand at 517.685 kb on - strand at 517.792 kb on + strand, within ABZR86_RS02525 at 517.792 kb on + strand, within ABZR86_RS02525 at 517.793 kb on - strand, within ABZR86_RS02525 at 517.981 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.375 kb on - strand at 518.394 kb on + strand at 518.487 kb on + strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.604 kb on + strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.626 kb on - strand, within ABZR86_RS02530 at 518.787 kb on - strand at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.983 kb on - strand, within ABZR86_RS02535 at 519.101 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.150 kb on + strand, within ABZR86_RS02540 at 519.151 kb on - strand, within ABZR86_RS02540 at 519.253 kb on + strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.366 kb on - strand, within ABZR86_RS02545
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 516,625 + ABZR86_RS02520 0.43 -0.4 516,625 + ABZR86_RS02520 0.43 +0.4 516,626 - ABZR86_RS02520 0.43 +0.2 516,626 - ABZR86_RS02520 0.43 +0.6 516,650 + ABZR86_RS02520 0.45 +0.3 516,650 + ABZR86_RS02520 0.45 -0.3 516,651 - ABZR86_RS02520 0.45 -0.3 516,656 + ABZR86_RS02520 0.45 -0.2 516,713 + ABZR86_RS02520 0.48 +0.3 516,713 + ABZR86_RS02520 0.48 +0.5 516,713 + ABZR86_RS02520 0.48 +0.4 516,713 + ABZR86_RS02520 0.48 -0.1 516,714 - ABZR86_RS02520 0.48 +0.8 516,714 - ABZR86_RS02520 0.48 -0.1 516,714 - ABZR86_RS02520 0.48 +0.4 516,714 - ABZR86_RS02520 0.48 +0.4 516,714 - ABZR86_RS02520 0.48 +0.5 516,714 - ABZR86_RS02520 0.48 +0.2 516,794 + ABZR86_RS02520 0.53 -0.3 516,794 + ABZR86_RS02520 0.53 -1.5 516,794 + ABZR86_RS02520 0.53 +0.5 516,795 - ABZR86_RS02520 0.53 -0.1 517,118 + ABZR86_RS02520 0.71 +0.1 517,118 + ABZR86_RS02520 0.71 -0.4 517,118 + ABZR86_RS02520 0.71 -0.4 517,118 + ABZR86_RS02520 0.71 -0.1 517,119 - ABZR86_RS02520 0.71 +0.0 517,119 - ABZR86_RS02520 0.71 +0.4 517,119 - ABZR86_RS02520 0.71 +0.1 517,163 + ABZR86_RS02520 0.74 -0.0 517,163 + ABZR86_RS02520 0.74 -0.5 517,163 + ABZR86_RS02520 0.74 -0.0 517,388 + ABZR86_RS02520 0.87 -0.3 517,388 + ABZR86_RS02520 0.87 +0.1 517,388 + ABZR86_RS02520 0.87 +0.3 517,628 + +0.2 517,628 + +0.6 517,684 + +0.1 517,684 + -0.2 517,685 - -0.1 517,685 - +0.1 517,792 + ABZR86_RS02525 0.23 +1.2 517,792 + ABZR86_RS02525 0.23 +0.1 517,793 - ABZR86_RS02525 0.23 -0.3 517,981 - ABZR86_RS02525 0.48 -0.2 518,016 - ABZR86_RS02525 0.52 -0.2 518,016 - ABZR86_RS02525 0.52 -0.1 518,132 - ABZR86_RS02525 0.68 -0.4 518,132 - ABZR86_RS02525 0.68 +0.2 518,165 - ABZR86_RS02525 0.72 -0.1 518,165 - ABZR86_RS02525 0.72 +0.0 518,375 - -0.1 518,394 + -0.0 518,487 + ABZR86_RS02530 0.26 -0.1 518,488 - ABZR86_RS02530 0.27 +0.2 518,488 - ABZR86_RS02530 0.27 -0.2 518,535 + ABZR86_RS02530 0.38 -0.1 518,535 + ABZR86_RS02530 0.38 -0.4 518,604 + ABZR86_RS02530 0.54 -2.7 518,605 - ABZR86_RS02530 0.55 -0.2 518,605 - ABZR86_RS02530 0.55 -1.1 518,626 - ABZR86_RS02530 0.60 -0.6 518,787 - +0.3 518,982 + ABZR86_RS02535 0.76 +0.1 518,982 + ABZR86_RS02535 0.76 -0.8 518,982 + ABZR86_RS02535 0.76 +0.2 518,982 + ABZR86_RS02535 0.76 +0.3 518,982 + ABZR86_RS02535 0.76 +0.4 518,983 - ABZR86_RS02535 0.77 -0.6 519,101 + ABZR86_RS02540 0.24 +0.9 519,139 + ABZR86_RS02540 0.39 +0.4 519,139 + ABZR86_RS02540 0.39 -0.4 519,139 + ABZR86_RS02540 0.39 +0.3 519,139 + ABZR86_RS02540 0.39 +0.3 519,139 + ABZR86_RS02540 0.39 -0.3 519,140 - ABZR86_RS02540 0.39 +0.2 519,140 - ABZR86_RS02540 0.39 -0.7 519,140 - ABZR86_RS02540 0.39 +0.6 519,140 - ABZR86_RS02540 0.39 +0.2 519,150 + ABZR86_RS02540 0.43 -0.0 519,151 - ABZR86_RS02540 0.43 -0.1 519,253 + ABZR86_RS02540 0.82 -0.7 519,254 - ABZR86_RS02540 0.82 -0.4 519,254 - ABZR86_RS02540 0.82 -0.4 519,254 - ABZR86_RS02540 0.82 +0.5 519,254 - ABZR86_RS02540 0.82 -0.3 519,254 - ABZR86_RS02540 0.82 +0.2 519,366 - ABZR86_RS02545 0.12 -0.8
Or see this region's nucleotide sequence