Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02520

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02510 and ABZR86_RS02515 are separated by 14 nucleotidesABZR86_RS02515 and ABZR86_RS02520 overlap by 4 nucleotidesABZR86_RS02520 and ABZR86_RS02525 overlap by 4 nucleotidesABZR86_RS02525 and ABZR86_RS02530 overlap by 1 nucleotides ABZR86_RS02510: ABZR86_RS02510 - DNA cytosine methyltransferase, at 513,391 to 515,451 _RS02510 ABZR86_RS02515: ABZR86_RS02515 - hypothetical protein, at 515,466 to 515,873 _RS02515 ABZR86_RS02520: ABZR86_RS02520 - DEAD/DEAH box helicase, at 515,870 to 517,621 _RS02520 ABZR86_RS02525: ABZR86_RS02525 - hypothetical protein, at 517,618 to 518,376 _RS02525 ABZR86_RS02530: ABZR86_RS02530 - hypothetical protein, at 518,376 to 518,795 _RS02530 Position (kb) 515 516 517 518Strain fitness (log2 ratio) -3 -2 -1 0 1at 515.227 kb on + strand, within ABZR86_RS02510at 515.237 kb on + strand, within ABZR86_RS02510at 515.237 kb on + strand, within ABZR86_RS02510at 515.237 kb on + strand, within ABZR86_RS02510at 515.237 kb on + strand, within ABZR86_RS02510at 515.238 kb on - strand, within ABZR86_RS02510at 515.242 kb on - strand, within ABZR86_RS02510at 515.242 kb on - strand, within ABZR86_RS02510at 515.242 kb on - strand, within ABZR86_RS02510at 515.302 kb on + strandat 515.739 kb on + strand, within ABZR86_RS02515at 515.739 kb on + strand, within ABZR86_RS02515at 515.740 kb on - strand, within ABZR86_RS02515at 515.740 kb on - strand, within ABZR86_RS02515at 515.740 kb on - strand, within ABZR86_RS02515at 515.740 kb on - strand, within ABZR86_RS02515at 515.876 kb on + strandat 515.876 kb on + strandat 515.877 kb on - strandat 515.891 kb on + strandat 515.991 kb on + strandat 515.991 kb on + strandat 515.991 kb on + strandat 515.992 kb on - strandat 515.992 kb on - strandat 516.153 kb on + strand, within ABZR86_RS02520at 516.153 kb on + strand, within ABZR86_RS02520at 516.154 kb on - strand, within ABZR86_RS02520at 516.189 kb on - strand, within ABZR86_RS02520at 516.450 kb on + strand, within ABZR86_RS02520at 516.450 kb on + strand, within ABZR86_RS02520at 516.451 kb on - strand, within ABZR86_RS02520at 516.451 kb on - strand, within ABZR86_RS02520at 516.451 kb on - strand, within ABZR86_RS02520at 516.451 kb on - strand, within ABZR86_RS02520at 516.451 kb on - strand, within ABZR86_RS02520at 516.451 kb on - strand, within ABZR86_RS02520at 516.485 kb on + strand, within ABZR86_RS02520at 516.485 kb on + strand, within ABZR86_RS02520at 516.486 kb on - strand, within ABZR86_RS02520at 516.584 kb on + strand, within ABZR86_RS02520at 516.584 kb on + strand, within ABZR86_RS02520at 516.584 kb on + strand, within ABZR86_RS02520at 516.585 kb on - strand, within ABZR86_RS02520at 516.600 kb on - strand, within ABZR86_RS02520at 516.625 kb on + strand, within ABZR86_RS02520at 516.625 kb on + strand, within ABZR86_RS02520at 516.626 kb on - strand, within ABZR86_RS02520at 516.626 kb on - strand, within ABZR86_RS02520at 516.650 kb on + strand, within ABZR86_RS02520at 516.650 kb on + strand, within ABZR86_RS02520at 516.651 kb on - strand, within ABZR86_RS02520at 516.656 kb on + strand, within ABZR86_RS02520at 516.713 kb on + strand, within ABZR86_RS02520at 516.713 kb on + strand, within ABZR86_RS02520at 516.713 kb on + strand, within ABZR86_RS02520at 516.713 kb on + strand, within ABZR86_RS02520at 516.714 kb on - strand, within ABZR86_RS02520at 516.714 kb on - strand, within ABZR86_RS02520at 516.714 kb on - strand, within ABZR86_RS02520at 516.714 kb on - strand, within ABZR86_RS02520at 516.714 kb on - strand, within ABZR86_RS02520at 516.714 kb on - strand, within ABZR86_RS02520at 516.794 kb on + strand, within ABZR86_RS02520at 516.794 kb on + strand, within ABZR86_RS02520at 516.794 kb on + strand, within ABZR86_RS02520at 516.795 kb on - strand, within ABZR86_RS02520at 517.118 kb on + strand, within ABZR86_RS02520at 517.118 kb on + strand, within ABZR86_RS02520at 517.118 kb on + strand, within ABZR86_RS02520at 517.118 kb on + strand, within ABZR86_RS02520at 517.119 kb on - strand, within ABZR86_RS02520at 517.119 kb on - strand, within ABZR86_RS02520at 517.119 kb on - strand, within ABZR86_RS02520at 517.163 kb on + strand, within ABZR86_RS02520at 517.163 kb on + strand, within ABZR86_RS02520at 517.163 kb on + strand, within ABZR86_RS02520at 517.388 kb on + strand, within ABZR86_RS02520at 517.388 kb on + strand, within ABZR86_RS02520at 517.388 kb on + strand, within ABZR86_RS02520at 517.628 kb on + strandat 517.628 kb on + strandat 517.684 kb on + strandat 517.684 kb on + strandat 517.685 kb on - strandat 517.685 kb on - strandat 517.792 kb on + strand, within ABZR86_RS02525at 517.792 kb on + strand, within ABZR86_RS02525at 517.793 kb on - strand, within ABZR86_RS02525at 517.981 kb on - strand, within ABZR86_RS02525at 518.016 kb on - strand, within ABZR86_RS02525at 518.016 kb on - strand, within ABZR86_RS02525at 518.132 kb on - strand, within ABZR86_RS02525at 518.132 kb on - strand, within ABZR86_RS02525at 518.165 kb on - strand, within ABZR86_RS02525at 518.165 kb on - strand, within ABZR86_RS02525at 518.375 kb on - strandat 518.394 kb on + strandat 518.487 kb on + strand, within ABZR86_RS02530at 518.488 kb on - strand, within ABZR86_RS02530at 518.488 kb on - strand, within ABZR86_RS02530at 518.535 kb on + strand, within ABZR86_RS02530at 518.535 kb on + strand, within ABZR86_RS02530at 518.604 kb on + strand, within ABZR86_RS02530at 518.605 kb on - strand, within ABZR86_RS02530at 518.605 kb on - strand, within ABZR86_RS02530

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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515,227 + ABZR86_RS02510 0.89 +0.3
515,237 + ABZR86_RS02510 0.90 -1.3
515,237 + ABZR86_RS02510 0.90 -0.3
515,237 + ABZR86_RS02510 0.90 +0.4
515,237 + ABZR86_RS02510 0.90 -0.0
515,238 - ABZR86_RS02510 0.90 +0.2
515,242 - ABZR86_RS02510 0.90 +0.0
515,242 - ABZR86_RS02510 0.90 -0.2
515,242 - ABZR86_RS02510 0.90 +1.2
515,302 + -0.3
515,739 + ABZR86_RS02515 0.67 -1.2
515,739 + ABZR86_RS02515 0.67 -0.3
515,740 - ABZR86_RS02515 0.67 -1.4
515,740 - ABZR86_RS02515 0.67 -0.5
515,740 - ABZR86_RS02515 0.67 +0.2
515,740 - ABZR86_RS02515 0.67 +0.1
515,876 + -0.3
515,876 + +0.0
515,877 - -0.6
515,891 + -0.2
515,991 + +0.2
515,991 + +0.2
515,991 + +0.0
515,992 - -1.3
515,992 - -2.9
516,153 + ABZR86_RS02520 0.16 -0.9
516,153 + ABZR86_RS02520 0.16 +0.6
516,154 - ABZR86_RS02520 0.16 -0.1
516,189 - ABZR86_RS02520 0.18 +0.5
516,450 + ABZR86_RS02520 0.33 +0.8
516,450 + ABZR86_RS02520 0.33 +0.7
516,451 - ABZR86_RS02520 0.33 -0.6
516,451 - ABZR86_RS02520 0.33 +0.1
516,451 - ABZR86_RS02520 0.33 -0.0
516,451 - ABZR86_RS02520 0.33 +0.6
516,451 - ABZR86_RS02520 0.33 +0.1
516,451 - ABZR86_RS02520 0.33 +0.9
516,485 + ABZR86_RS02520 0.35 +0.2
516,485 + ABZR86_RS02520 0.35 +0.1
516,486 - ABZR86_RS02520 0.35 +0.4
516,584 + ABZR86_RS02520 0.41 +1.1
516,584 + ABZR86_RS02520 0.41 +0.1
516,584 + ABZR86_RS02520 0.41 -0.5
516,585 - ABZR86_RS02520 0.41 -0.8
516,600 - ABZR86_RS02520 0.42 +0.5
516,625 + ABZR86_RS02520 0.43 -0.4
516,625 + ABZR86_RS02520 0.43 +0.4
516,626 - ABZR86_RS02520 0.43 +0.2
516,626 - ABZR86_RS02520 0.43 +0.6
516,650 + ABZR86_RS02520 0.45 +0.3
516,650 + ABZR86_RS02520 0.45 -0.3
516,651 - ABZR86_RS02520 0.45 -0.3
516,656 + ABZR86_RS02520 0.45 -0.2
516,713 + ABZR86_RS02520 0.48 +0.3
516,713 + ABZR86_RS02520 0.48 +0.5
516,713 + ABZR86_RS02520 0.48 +0.4
516,713 + ABZR86_RS02520 0.48 -0.1
516,714 - ABZR86_RS02520 0.48 +0.8
516,714 - ABZR86_RS02520 0.48 -0.1
516,714 - ABZR86_RS02520 0.48 +0.4
516,714 - ABZR86_RS02520 0.48 +0.4
516,714 - ABZR86_RS02520 0.48 +0.5
516,714 - ABZR86_RS02520 0.48 +0.2
516,794 + ABZR86_RS02520 0.53 -0.3
516,794 + ABZR86_RS02520 0.53 -1.5
516,794 + ABZR86_RS02520 0.53 +0.5
516,795 - ABZR86_RS02520 0.53 -0.1
517,118 + ABZR86_RS02520 0.71 +0.1
517,118 + ABZR86_RS02520 0.71 -0.4
517,118 + ABZR86_RS02520 0.71 -0.4
517,118 + ABZR86_RS02520 0.71 -0.1
517,119 - ABZR86_RS02520 0.71 +0.0
517,119 - ABZR86_RS02520 0.71 +0.4
517,119 - ABZR86_RS02520 0.71 +0.1
517,163 + ABZR86_RS02520 0.74 -0.0
517,163 + ABZR86_RS02520 0.74 -0.5
517,163 + ABZR86_RS02520 0.74 -0.0
517,388 + ABZR86_RS02520 0.87 -0.3
517,388 + ABZR86_RS02520 0.87 +0.1
517,388 + ABZR86_RS02520 0.87 +0.3
517,628 + +0.2
517,628 + +0.6
517,684 + +0.1
517,684 + -0.2
517,685 - -0.1
517,685 - +0.1
517,792 + ABZR86_RS02525 0.23 +1.2
517,792 + ABZR86_RS02525 0.23 +0.1
517,793 - ABZR86_RS02525 0.23 -0.3
517,981 - ABZR86_RS02525 0.48 -0.2
518,016 - ABZR86_RS02525 0.52 -0.2
518,016 - ABZR86_RS02525 0.52 -0.1
518,132 - ABZR86_RS02525 0.68 -0.4
518,132 - ABZR86_RS02525 0.68 +0.2
518,165 - ABZR86_RS02525 0.72 -0.1
518,165 - ABZR86_RS02525 0.72 +0.0
518,375 - -0.1
518,394 + -0.0
518,487 + ABZR86_RS02530 0.26 -0.1
518,488 - ABZR86_RS02530 0.27 +0.2
518,488 - ABZR86_RS02530 0.27 -0.2
518,535 + ABZR86_RS02530 0.38 -0.1
518,535 + ABZR86_RS02530 0.38 -0.4
518,604 + ABZR86_RS02530 0.54 -2.7
518,605 - ABZR86_RS02530 0.55 -0.2
518,605 - ABZR86_RS02530 0.55 -1.1

Or see this region's nucleotide sequence