Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2611

Experiment: MoYLS4 with Vancomycin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2609 and DvMF_2610 overlap by 1 nucleotidesDvMF_2610 and DvMF_2611 overlap by 8 nucleotidesDvMF_2611 and DvMF_2612 are separated by 524 nucleotides DvMF_2609: DvMF_2609 - inner-membrane translocator (RefSeq), at 3,297,151 to 3,298,398 _2609 DvMF_2610: DvMF_2610 - ABC transporter related (RefSeq), at 3,298,398 to 3,299,210 _2610 DvMF_2611: DvMF_2611 - ABC transporter related (RefSeq), at 3,299,203 to 3,299,907 _2611 DvMF_2612: DvMF_2612 - pyruvate carboxyltransferase (RefSeq), at 3,300,432 to 3,301,799 _2612 Position (kb) 3299 3300Strain fitness (log2 ratio) -1 0 1at 3298.714 kb on + strand, within DvMF_2610at 3298.714 kb on - strand, within DvMF_2610at 3298.794 kb on + strand, within DvMF_2610at 3298.802 kb on - strand, within DvMF_2610at 3298.915 kb on + strand, within DvMF_2610at 3299.174 kb on + strandat 3299.390 kb on + strand, within DvMF_2611at 3299.655 kb on - strand, within DvMF_2611at 3299.952 kb on + strandat 3300.026 kb on + strandat 3300.039 kb on - strandat 3300.420 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml
remove
3,298,714 + DvMF_2610 0.39 -1.7
3,298,714 - DvMF_2610 0.39 +0.2
3,298,794 + DvMF_2610 0.49 -0.9
3,298,802 - DvMF_2610 0.50 -1.7
3,298,915 + DvMF_2610 0.64 -1.6
3,299,174 + -1.3
3,299,390 + DvMF_2611 0.27 -0.8
3,299,655 - DvMF_2611 0.64 -1.4
3,299,952 + -0.4
3,300,026 + -0.2
3,300,039 - -0.0
3,300,420 - -0.7

Or see this region's nucleotide sequence