Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2267

Experiment: MoYLS4 with Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2266 and DvMF_2267 overlap by 1 nucleotidesDvMF_2267 and DvMF_2268 are separated by 743 nucleotides DvMF_2266: DvMF_2266 - putative lipoprotein (RefSeq), at 2,846,772 to 2,848,310 _2266 DvMF_2267: DvMF_2267 - peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (RefSeq), at 2,848,310 to 2,849,344 _2267 DvMF_2268: DvMF_2268 - branched-chain amino acid aminotransferase (RefSeq), at 2,850,088 to 2,851,011 _2268 Position (kb) 2848 2849 2850Strain fitness (log2 ratio) -1 0 1at 2847.601 kb on + strand, within DvMF_2266at 2847.609 kb on - strand, within DvMF_2266at 2847.688 kb on - strand, within DvMF_2266at 2847.777 kb on + strand, within DvMF_2266at 2847.839 kb on + strand, within DvMF_2266at 2847.839 kb on + strand, within DvMF_2266at 2847.850 kb on + strand, within DvMF_2266at 2847.850 kb on + strand, within DvMF_2266at 2847.858 kb on - strand, within DvMF_2266at 2848.164 kb on - strandat 2848.243 kb on + strandat 2848.277 kb on + strandat 2848.297 kb on + strandat 2848.381 kb on + strandat 2848.471 kb on - strand, within DvMF_2267at 2848.603 kb on + strand, within DvMF_2267at 2848.675 kb on + strand, within DvMF_2267at 2848.683 kb on - strand, within DvMF_2267at 2848.694 kb on + strand, within DvMF_2267at 2848.711 kb on - strand, within DvMF_2267at 2848.711 kb on - strand, within DvMF_2267at 2848.785 kb on + strand, within DvMF_2267at 2848.785 kb on + strand, within DvMF_2267at 2849.223 kb on - strand, within DvMF_2267at 2849.345 kb on - strandat 2849.496 kb on + strandat 2849.499 kb on - strandat 2849.504 kb on - strandat 2849.537 kb on - strandat 2849.544 kb on - strandat 2849.736 kb on + strandat 2849.895 kb on + strandat 2850.071 kb on + strandat 2850.151 kb on - strandat 2850.170 kb on - strandat 2850.174 kb on + strandat 2850.182 kb on - strand, within DvMF_2268

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml
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2,847,601 + DvMF_2266 0.54 -0.2
2,847,609 - DvMF_2266 0.54 +0.0
2,847,688 - DvMF_2266 0.60 -0.4
2,847,777 + DvMF_2266 0.65 +0.0
2,847,839 + DvMF_2266 0.69 +0.2
2,847,839 + DvMF_2266 0.69 -0.2
2,847,850 + DvMF_2266 0.70 +0.4
2,847,850 + DvMF_2266 0.70 -0.2
2,847,858 - DvMF_2266 0.71 +0.1
2,848,164 - -0.0
2,848,243 + -0.2
2,848,277 + -0.2
2,848,297 + +0.0
2,848,381 + -0.4
2,848,471 - DvMF_2267 0.16 -0.2
2,848,603 + DvMF_2267 0.28 -0.1
2,848,675 + DvMF_2267 0.35 +0.8
2,848,683 - DvMF_2267 0.36 -0.3
2,848,694 + DvMF_2267 0.37 +0.0
2,848,711 - DvMF_2267 0.39 -0.4
2,848,711 - DvMF_2267 0.39 -0.5
2,848,785 + DvMF_2267 0.46 -0.4
2,848,785 + DvMF_2267 0.46 +0.4
2,849,223 - DvMF_2267 0.88 -0.3
2,849,345 - -0.5
2,849,496 + -0.6
2,849,499 - -0.8
2,849,504 - -0.2
2,849,537 - -0.6
2,849,544 - -0.9
2,849,736 + -0.6
2,849,895 + +0.2
2,850,071 + -0.7
2,850,151 - -0.6
2,850,170 - -0.5
2,850,174 + -0.5
2,850,182 - DvMF_2268 0.10 -0.2

Or see this region's nucleotide sequence