Experiment: MoYLS4 with Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2240 and DvMF_2241 are separated by 553 nucleotides DvMF_2241 and DvMF_2242 are separated by 289 nucleotides
DvMF_2240: DvMF_2240 - hypothetical protein (RefSeq), at 2,812,227 to 2,813,327
_2240
DvMF_2241: DvMF_2241 - benzoate transporter (RefSeq), at 2,813,881 to 2,815,104
_2241
DvMF_2242: DvMF_2242 - putative signal transduction protein (RefSeq), at 2,815,394 to 2,816,470
_2242
Position (kb)
2813
2814
2815
2816 Strain fitness (log2 ratio)
-1
0
1 at 2812.919 kb on + strand, within DvMF_2240 at 2813.112 kb on - strand, within DvMF_2240 at 2813.112 kb on - strand, within DvMF_2240 at 2813.241 kb on - strand at 2813.297 kb on + strand at 2813.337 kb on - strand at 2813.517 kb on + strand at 2813.565 kb on + strand at 2813.630 kb on + strand at 2813.729 kb on + strand at 2813.864 kb on + strand at 2813.919 kb on - strand at 2814.068 kb on + strand, within DvMF_2241 at 2814.076 kb on - strand, within DvMF_2241 at 2814.153 kb on + strand, within DvMF_2241 at 2814.210 kb on - strand, within DvMF_2241 at 2814.326 kb on - strand, within DvMF_2241 at 2814.433 kb on + strand, within DvMF_2241 at 2814.527 kb on + strand, within DvMF_2241 at 2814.527 kb on + strand, within DvMF_2241 at 2814.830 kb on - strand, within DvMF_2241 at 2814.892 kb on + strand, within DvMF_2241 at 2814.937 kb on + strand, within DvMF_2241 at 2815.220 kb on - strand at 2815.418 kb on + strand at 2815.504 kb on - strand, within DvMF_2242 at 2815.551 kb on + strand, within DvMF_2242 at 2815.599 kb on - strand, within DvMF_2242 at 2815.628 kb on - strand, within DvMF_2242 at 2815.977 kb on + strand, within DvMF_2242
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml remove 2,812,919 + DvMF_2240 0.63 -0.4 2,813,112 - DvMF_2240 0.80 -0.5 2,813,112 - DvMF_2240 0.80 -0.5 2,813,241 - +0.3 2,813,297 + -0.2 2,813,337 - -0.7 2,813,517 + -0.4 2,813,565 + -0.5 2,813,630 + -0.6 2,813,729 + -0.3 2,813,864 + -0.8 2,813,919 - -0.4 2,814,068 + DvMF_2241 0.15 +0.2 2,814,076 - DvMF_2241 0.16 -0.5 2,814,153 + DvMF_2241 0.22 -0.3 2,814,210 - DvMF_2241 0.27 -0.6 2,814,326 - DvMF_2241 0.36 -0.3 2,814,433 + DvMF_2241 0.45 -0.3 2,814,527 + DvMF_2241 0.53 -0.4 2,814,527 + DvMF_2241 0.53 -0.6 2,814,830 - DvMF_2241 0.78 -0.4 2,814,892 + DvMF_2241 0.83 -0.2 2,814,937 + DvMF_2241 0.86 -1.0 2,815,220 - -0.6 2,815,418 + -0.5 2,815,504 - DvMF_2242 0.10 -0.1 2,815,551 + DvMF_2242 0.15 -0.3 2,815,599 - DvMF_2242 0.19 -0.6 2,815,628 - DvMF_2242 0.22 -0.1 2,815,977 + DvMF_2242 0.54 -0.3
Or see this region's nucleotide sequence