Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2224

Experiment: MoYLS4 with Vancomycin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2222 and DvMF_2223 are separated by 263 nucleotidesDvMF_2223 and DvMF_R0061 are separated by 112 nucleotidesDvMF_R0061 and DvMF_2224 are separated by 97 nucleotidesDvMF_2224 and DvMF_2225 are separated by 446 nucleotides DvMF_2222: DvMF_2222 - protein of unknown function DUF214 (RefSeq), at 2,781,487 to 2,784,294 _2222 DvMF_2223: DvMF_2223 - diacylglycerol kinase (RefSeq), at 2,784,558 to 2,784,920 _2223 DvMF_R0061: DvMF_R0061 - tRNA-Lys (RefSeq), at 2,785,033 to 2,785,108 _R0061 DvMF_2224: DvMF_2224 - seryl-tRNA synthetase (RefSeq), at 2,785,206 to 2,786,483 _2224 DvMF_2225: DvMF_2225 - hypothetical protein (RefSeq), at 2,786,930 to 2,787,349 _2225 Position (kb) 2785 2786 2787Strain fitness (log2 ratio) -1 0 1at 2784.222 kb on - strandat 2784.369 kb on - strandat 2784.503 kb on + strandat 2784.555 kb on + strandat 2786.203 kb on + strand, within DvMF_2224at 2786.918 kb on + strandat 2786.968 kb on + strandat 2786.976 kb on - strand, within DvMF_2225at 2787.260 kb on - strand, within DvMF_2225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml
remove
2,784,222 - -0.4
2,784,369 - -0.8
2,784,503 + -0.3
2,784,555 + +0.5
2,786,203 + DvMF_2224 0.78 -1.0
2,786,918 + -1.5
2,786,968 + -0.2
2,786,976 - DvMF_2225 0.11 -0.2
2,787,260 - DvMF_2225 0.79 +0.3

Or see this region's nucleotide sequence