Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1643

Experiment: MoYLS4 with Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1641 and DvMF_1642 are separated by 2 nucleotidesDvMF_1642 and DvMF_1643 are separated by 2 nucleotidesDvMF_1643 and DvMF_1644 are separated by 105 nucleotides DvMF_1641: DvMF_1641 - hypothetical protein (RefSeq), at 2,021,613 to 2,022,518 _1641 DvMF_1642: DvMF_1642 - hypothetical protein (RefSeq), at 2,022,521 to 2,022,874 _1642 DvMF_1643: DvMF_1643 - phage tape measure protein (RefSeq), at 2,022,877 to 2,025,693 _1643 DvMF_1644: DvMF_1644 - hypothetical protein (RefSeq), at 2,025,799 to 2,026,587 _1644 Position (kb) 2022 2023 2024 2025 2026Strain fitness (log2 ratio) -2 -1 0 1at 2021.904 kb on - strand, within DvMF_1641at 2022.016 kb on + strand, within DvMF_1641at 2022.024 kb on - strand, within DvMF_1641at 2022.120 kb on + strand, within DvMF_1641at 2022.138 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.186 kb on - strand, within DvMF_1641at 2022.238 kb on - strand, within DvMF_1641at 2022.258 kb on + strand, within DvMF_1641at 2022.311 kb on - strand, within DvMF_1641at 2022.334 kb on - strand, within DvMF_1641at 2022.461 kb on + strandat 2022.514 kb on + strandat 2022.522 kb on - strandat 2022.549 kb on - strandat 2022.654 kb on + strand, within DvMF_1642at 2022.908 kb on + strandat 2023.079 kb on - strandat 2023.230 kb on + strand, within DvMF_1643at 2023.292 kb on + strand, within DvMF_1643at 2023.315 kb on - strand, within DvMF_1643at 2023.355 kb on + strand, within DvMF_1643at 2023.574 kb on - strand, within DvMF_1643at 2023.815 kb on + strand, within DvMF_1643at 2023.967 kb on + strand, within DvMF_1643at 2023.967 kb on + strand, within DvMF_1643at 2023.967 kb on + strand, within DvMF_1643at 2024.058 kb on + strand, within DvMF_1643at 2024.132 kb on + strand, within DvMF_1643at 2024.467 kb on + strand, within DvMF_1643at 2024.475 kb on - strand, within DvMF_1643at 2024.504 kb on + strand, within DvMF_1643at 2024.698 kb on + strand, within DvMF_1643at 2024.698 kb on + strand, within DvMF_1643at 2024.764 kb on - strand, within DvMF_1643at 2024.874 kb on - strand, within DvMF_1643at 2025.025 kb on + strand, within DvMF_1643at 2025.075 kb on - strand, within DvMF_1643at 2025.285 kb on + strand, within DvMF_1643at 2025.384 kb on + strand, within DvMF_1643at 2025.581 kb on + strandat 2025.595 kb on - strandat 2025.622 kb on + strandat 2025.622 kb on + strandat 2025.813 kb on - strandat 2026.138 kb on - strand, within DvMF_1644at 2026.404 kb on + strand, within DvMF_1644at 2026.498 kb on + strand, within DvMF_1644

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml
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2,021,904 - DvMF_1641 0.32 -0.4
2,022,016 + DvMF_1641 0.44 -0.8
2,022,024 - DvMF_1641 0.45 -0.5
2,022,120 + DvMF_1641 0.56 -0.3
2,022,138 - DvMF_1641 0.58 -0.5
2,022,175 - DvMF_1641 0.62 -0.3
2,022,175 - DvMF_1641 0.62 -0.5
2,022,175 - DvMF_1641 0.62 -0.4
2,022,186 - DvMF_1641 0.63 -0.1
2,022,238 - DvMF_1641 0.69 -0.4
2,022,258 + DvMF_1641 0.71 -0.2
2,022,311 - DvMF_1641 0.77 -0.4
2,022,334 - DvMF_1641 0.80 -0.2
2,022,461 + -0.1
2,022,514 + -0.4
2,022,522 - -0.4
2,022,549 - -0.2
2,022,654 + DvMF_1642 0.38 -1.8
2,022,908 + -0.6
2,023,079 - -0.3
2,023,230 + DvMF_1643 0.13 -0.4
2,023,292 + DvMF_1643 0.15 -0.9
2,023,315 - DvMF_1643 0.16 -0.4
2,023,355 + DvMF_1643 0.17 +0.0
2,023,574 - DvMF_1643 0.25 -0.2
2,023,815 + DvMF_1643 0.33 -0.8
2,023,967 + DvMF_1643 0.39 +0.1
2,023,967 + DvMF_1643 0.39 -0.6
2,023,967 + DvMF_1643 0.39 -0.6
2,024,058 + DvMF_1643 0.42 -0.4
2,024,132 + DvMF_1643 0.45 -1.3
2,024,467 + DvMF_1643 0.56 -0.5
2,024,475 - DvMF_1643 0.57 -0.1
2,024,504 + DvMF_1643 0.58 -0.1
2,024,698 + DvMF_1643 0.65 -0.4
2,024,698 + DvMF_1643 0.65 -0.4
2,024,764 - DvMF_1643 0.67 -0.4
2,024,874 - DvMF_1643 0.71 -1.4
2,025,025 + DvMF_1643 0.76 -0.9
2,025,075 - DvMF_1643 0.78 -0.4
2,025,285 + DvMF_1643 0.85 +0.3
2,025,384 + DvMF_1643 0.89 -0.4
2,025,581 + -0.3
2,025,595 - -0.5
2,025,622 + -0.2
2,025,622 + -0.6
2,025,813 - -0.5
2,026,138 - DvMF_1644 0.43 -0.2
2,026,404 + DvMF_1644 0.77 -1.0
2,026,498 + DvMF_1644 0.89 -0.6

Or see this region's nucleotide sequence