Experiment: MoYLS4 with Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1623 and DvMF_1624 are separated by 286 nucleotides DvMF_1624 and DvMF_1625 overlap by 20 nucleotides
DvMF_1623: DvMF_1623 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 2,001,338 to 2,001,949
_1623
DvMF_1624: DvMF_1624 - two component transcriptional regulator, winged helix family (RefSeq), at 2,002,236 to 2,003,072
_1624
DvMF_1625: DvMF_1625 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,003,053 to 2,004,765
_1625
Position (kb)
2002
2003
2004 Strain fitness (log2 ratio)
-1
0
1 at 2001.369 kb on + strand at 2001.396 kb on + strand at 2001.447 kb on + strand, within DvMF_1623 at 2001.678 kb on - strand, within DvMF_1623 at 2001.694 kb on + strand, within DvMF_1623 at 2001.701 kb on + strand, within DvMF_1623 at 2001.747 kb on - strand, within DvMF_1623 at 2001.788 kb on - strand, within DvMF_1623 at 2002.422 kb on - strand, within DvMF_1624 at 2002.467 kb on - strand, within DvMF_1624 at 2002.675 kb on + strand, within DvMF_1624 at 2002.751 kb on - strand, within DvMF_1624 at 2002.769 kb on - strand, within DvMF_1624 at 2002.854 kb on + strand, within DvMF_1624 at 2002.860 kb on - strand, within DvMF_1624 at 2002.860 kb on - strand, within DvMF_1624 at 2003.068 kb on + strand at 2003.344 kb on - strand, within DvMF_1625 at 2003.725 kb on - strand, within DvMF_1625 at 2003.735 kb on - strand, within DvMF_1625 at 2003.746 kb on - strand, within DvMF_1625 at 2003.812 kb on + strand, within DvMF_1625 at 2003.820 kb on - strand, within DvMF_1625 at 2003.846 kb on - strand, within DvMF_1625 at 2003.884 kb on - strand, within DvMF_1625 at 2003.966 kb on - strand, within DvMF_1625 at 2003.989 kb on - strand, within DvMF_1625
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml remove 2,001,369 + +0.7 2,001,396 + -0.2 2,001,447 + DvMF_1623 0.18 +0.5 2,001,678 - DvMF_1623 0.56 -0.3 2,001,694 + DvMF_1623 0.58 -0.4 2,001,701 + DvMF_1623 0.59 -0.5 2,001,747 - DvMF_1623 0.67 +0.3 2,001,788 - DvMF_1623 0.74 -0.1 2,002,422 - DvMF_1624 0.22 -0.0 2,002,467 - DvMF_1624 0.28 +0.2 2,002,675 + DvMF_1624 0.52 -1.1 2,002,751 - DvMF_1624 0.62 -0.2 2,002,769 - DvMF_1624 0.64 -0.3 2,002,854 + DvMF_1624 0.74 -0.4 2,002,860 - DvMF_1624 0.75 -0.2 2,002,860 - DvMF_1624 0.75 -0.0 2,003,068 + +0.2 2,003,344 - DvMF_1625 0.17 -0.4 2,003,725 - DvMF_1625 0.39 -0.4 2,003,735 - DvMF_1625 0.40 -0.5 2,003,746 - DvMF_1625 0.40 -0.2 2,003,812 + DvMF_1625 0.44 -0.3 2,003,820 - DvMF_1625 0.45 -0.1 2,003,846 - DvMF_1625 0.46 -0.5 2,003,884 - DvMF_1625 0.49 -0.6 2,003,966 - DvMF_1625 0.53 -0.6 2,003,989 - DvMF_1625 0.55 -0.4
Or see this region's nucleotide sequence