Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1510

Experiment: MoYLS4 with Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1508 and DvMF_1509 are separated by 95 nucleotidesDvMF_1509 and DvMF_1510 are separated by 384 nucleotidesDvMF_1510 and DvMF_1511 are separated by 206 nucleotides DvMF_1508: DvMF_1508 - hypothetical protein (RefSeq), at 1,860,298 to 1,860,729 _1508 DvMF_1509: DvMF_1509 - hypothetical protein (RefSeq), at 1,860,825 to 1,861,259 _1509 DvMF_1510: DvMF_1510 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,861,644 to 1,863,056 _1510 DvMF_1511: DvMF_1511 - hypothetical protein (RefSeq), at 1,863,263 to 1,864,009 _1511 Position (kb) 1861 1862 1863 1864Strain fitness (log2 ratio) -1 0 1at 1860.744 kb on - strandat 1860.755 kb on + strandat 1860.755 kb on + strandat 1860.763 kb on - strandat 1860.764 kb on - strandat 1860.822 kb on + strandat 1860.962 kb on + strand, within DvMF_1509at 1861.099 kb on - strand, within DvMF_1509at 1861.593 kb on - strandat 1861.643 kb on - strandat 1861.735 kb on - strandat 1861.935 kb on - strand, within DvMF_1510at 1862.142 kb on - strand, within DvMF_1510at 1862.223 kb on + strand, within DvMF_1510at 1862.238 kb on - strand, within DvMF_1510at 1862.259 kb on + strand, within DvMF_1510at 1862.286 kb on - strand, within DvMF_1510at 1862.305 kb on - strand, within DvMF_1510at 1862.437 kb on + strand, within DvMF_1510at 1862.460 kb on - strand, within DvMF_1510at 1862.491 kb on - strand, within DvMF_1510at 1862.540 kb on + strand, within DvMF_1510at 1862.610 kb on - strand, within DvMF_1510at 1862.686 kb on - strand, within DvMF_1510at 1862.938 kb on + strandat 1863.481 kb on + strand, within DvMF_1511at 1863.631 kb on - strand, within DvMF_1511at 1863.678 kb on + strand, within DvMF_1511at 1863.686 kb on - strand, within DvMF_1511at 1863.817 kb on + strand, within DvMF_1511at 1863.825 kb on - strand, within DvMF_1511

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml
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1,860,744 - -0.6
1,860,755 + -0.3
1,860,755 + -0.8
1,860,763 - +0.2
1,860,764 - +0.3
1,860,822 + -0.3
1,860,962 + DvMF_1509 0.31 +0.2
1,861,099 - DvMF_1509 0.63 -0.0
1,861,593 - -0.1
1,861,643 - -0.4
1,861,735 - +0.3
1,861,935 - DvMF_1510 0.21 +0.2
1,862,142 - DvMF_1510 0.35 -0.2
1,862,223 + DvMF_1510 0.41 +0.2
1,862,238 - DvMF_1510 0.42 -0.3
1,862,259 + DvMF_1510 0.44 +0.1
1,862,286 - DvMF_1510 0.45 +0.2
1,862,305 - DvMF_1510 0.47 +0.1
1,862,437 + DvMF_1510 0.56 +0.6
1,862,460 - DvMF_1510 0.58 +0.4
1,862,491 - DvMF_1510 0.60 -0.3
1,862,540 + DvMF_1510 0.63 +0.2
1,862,610 - DvMF_1510 0.68 +0.1
1,862,686 - DvMF_1510 0.74 +0.2
1,862,938 + +0.5
1,863,481 + DvMF_1511 0.29 -0.5
1,863,631 - DvMF_1511 0.49 -0.4
1,863,678 + DvMF_1511 0.56 -0.8
1,863,686 - DvMF_1511 0.57 -0.5
1,863,817 + DvMF_1511 0.74 -0.6
1,863,825 - DvMF_1511 0.75 +0.4

Or see this region's nucleotide sequence