Experiment: MoYLS4 with Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0300 and DvMF_0301 are separated by 144 nucleotides DvMF_0301 and DvMF_0302 are separated by 115 nucleotides DvMF_0302 and DvMF_0303 are separated by 25 nucleotides
DvMF_0300: DvMF_0300 - CgeB family protein (RefSeq), at 345,898 to 347,244
_0300
DvMF_0301: DvMF_0301 - extracellular solute-binding protein family 3 (RefSeq), at 347,389 to 348,255
_0301
DvMF_0302: DvMF_0302 - domain of unknown function DUF1737 (RefSeq), at 348,371 to 348,577
_0302
DvMF_0303: DvMF_0303 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 348,603 to 350,378
_0303
Position (kb) 347
348
349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 346.394 kb on - strand, within DvMF_0300 at 346.439 kb on + strand, within DvMF_0300 at 346.443 kb on + strand, within DvMF_0300 at 346.443 kb on + strand, within DvMF_0300 at 346.449 kb on + strand, within DvMF_0300 at 346.451 kb on - strand, within DvMF_0300 at 346.540 kb on - strand, within DvMF_0300 at 346.590 kb on - strand, within DvMF_0300 at 346.617 kb on - strand, within DvMF_0300 at 346.645 kb on + strand, within DvMF_0300 at 346.786 kb on - strand, within DvMF_0300 at 346.905 kb on + strand, within DvMF_0300 at 347.107 kb on + strand, within DvMF_0300 at 347.179 kb on + strand at 347.350 kb on + strand at 347.407 kb on - strand at 347.461 kb on - strand at 347.490 kb on - strand, within DvMF_0301 at 347.497 kb on + strand, within DvMF_0301 at 347.627 kb on + strand, within DvMF_0301 at 347.668 kb on - strand, within DvMF_0301 at 347.787 kb on - strand, within DvMF_0301 at 347.823 kb on + strand, within DvMF_0301 at 347.835 kb on + strand, within DvMF_0301 at 347.842 kb on + strand, within DvMF_0301 at 347.847 kb on + strand, within DvMF_0301 at 347.855 kb on - strand, within DvMF_0301 at 347.855 kb on - strand, within DvMF_0301 at 347.855 kb on - strand, within DvMF_0301 at 347.958 kb on + strand, within DvMF_0301 at 347.966 kb on - strand, within DvMF_0301 at 348.027 kb on + strand, within DvMF_0301 at 348.046 kb on + strand, within DvMF_0301 at 348.085 kb on + strand, within DvMF_0301 at 348.093 kb on - strand, within DvMF_0301 at 348.093 kb on - strand, within DvMF_0301 at 348.119 kb on - strand, within DvMF_0301 at 348.346 kb on + strand at 348.442 kb on - strand, within DvMF_0302 at 349.082 kb on + strand, within DvMF_0303 at 349.181 kb on + strand, within DvMF_0303
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.25 mg/ml remove 346,394 - DvMF_0300 0.37 +0.5 346,439 + DvMF_0300 0.40 +0.8 346,443 + DvMF_0300 0.40 +0.5 346,443 + DvMF_0300 0.40 +2.0 346,449 + DvMF_0300 0.41 -3.4 346,451 - DvMF_0300 0.41 +0.8 346,540 - DvMF_0300 0.48 -0.1 346,590 - DvMF_0300 0.51 +1.0 346,617 - DvMF_0300 0.53 +0.8 346,645 + DvMF_0300 0.55 +0.4 346,786 - DvMF_0300 0.66 +0.7 346,905 + DvMF_0300 0.75 +0.5 347,107 + DvMF_0300 0.90 +0.6 347,179 + +0.5 347,350 + -0.4 347,407 - -0.8 347,461 - -0.5 347,490 - DvMF_0301 0.12 -0.3 347,497 + DvMF_0301 0.12 -0.3 347,627 + DvMF_0301 0.27 -0.4 347,668 - DvMF_0301 0.32 -0.1 347,787 - DvMF_0301 0.46 -0.4 347,823 + DvMF_0301 0.50 -0.1 347,835 + DvMF_0301 0.51 -0.5 347,842 + DvMF_0301 0.52 +0.6 347,847 + DvMF_0301 0.53 -0.2 347,855 - DvMF_0301 0.54 -0.1 347,855 - DvMF_0301 0.54 -0.1 347,855 - DvMF_0301 0.54 -0.3 347,958 + DvMF_0301 0.66 -0.5 347,966 - DvMF_0301 0.67 +1.2 348,027 + DvMF_0301 0.74 -0.5 348,046 + DvMF_0301 0.76 -1.1 348,085 + DvMF_0301 0.80 -0.1 348,093 - DvMF_0301 0.81 -0.1 348,093 - DvMF_0301 0.81 -0.2 348,119 - DvMF_0301 0.84 +0.0 348,346 + -0.4 348,442 - DvMF_0302 0.34 -0.6 349,082 + DvMF_0303 0.27 +0.1 349,181 + DvMF_0303 0.33 -0.4
Or see this region's nucleotide sequence