Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4101

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4100 and Shewana3_4101 are separated by 109 nucleotidesShewana3_4101 and Shewana3_4102 are separated by 14 nucleotides Shewana3_4100: Shewana3_4100 - glycosyl transferase family protein (RefSeq), at 4,922,397 to 4,923,419 _4100 Shewana3_4101: Shewana3_4101 - 3-deoxy-D-manno-octulosonic-acid kinase (RefSeq), at 4,923,529 to 4,924,281 _4101 Shewana3_4102: Shewana3_4102 - coproporphyrinogen oxidase (RefSeq), at 4,924,296 to 4,925,621 _4102 Position (kb) 4923 4924 4925Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4922.612 kb on - strand, within Shewana3_4100at 4922.664 kb on + strand, within Shewana3_4100at 4922.671 kb on - strand, within Shewana3_4100at 4922.775 kb on + strand, within Shewana3_4100at 4922.792 kb on - strand, within Shewana3_4100at 4922.815 kb on + strand, within Shewana3_4100at 4922.815 kb on + strand, within Shewana3_4100at 4922.823 kb on - strand, within Shewana3_4100at 4922.970 kb on - strand, within Shewana3_4100at 4922.978 kb on + strand, within Shewana3_4100at 4923.044 kb on - strand, within Shewana3_4100at 4923.205 kb on + strand, within Shewana3_4100at 4923.364 kb on - strandat 4923.449 kb on + strandat 4923.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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4,922,612 - Shewana3_4100 0.21 -3.4
4,922,664 + Shewana3_4100 0.26 -1.3
4,922,671 - Shewana3_4100 0.27 -2.9
4,922,775 + Shewana3_4100 0.37 -3.3
4,922,792 - Shewana3_4100 0.39 -5.8
4,922,815 + Shewana3_4100 0.41 +0.2
4,922,815 + Shewana3_4100 0.41 -3.4
4,922,823 - Shewana3_4100 0.42 -1.8
4,922,970 - Shewana3_4100 0.56 -4.9
4,922,978 + Shewana3_4100 0.57 -1.8
4,923,044 - Shewana3_4100 0.63 -2.6
4,923,205 + Shewana3_4100 0.79 -4.7
4,923,364 - -4.8
4,923,449 + -5.8
4,923,470 + -3.2

Or see this region's nucleotide sequence