Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4090 and coaD are separated by 66 nucleotides coaD and Shewana3_4092 are separated by 33 nucleotides Shewana3_4092 and Shewana3_4093 are separated by 33 nucleotides Shewana3_4093 and Shewana3_4094 are separated by 31 nucleotides Shewana3_4094 and Shewana3_4095 overlap by 10 nucleotides
Shewana3_4090: Shewana3_4090 - hypothetical protein (RefSeq), at 4,913,115 to 4,914,587
_4090
Shewana3_4091: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 4,914,654 to 4,915,145
coaD
Shewana3_4092: Shewana3_4092 - hypothetical protein (RefSeq), at 4,915,179 to 4,915,388
_4092
Shewana3_4093: Shewana3_4093 - glycosyl transferase, group 1 (RefSeq), at 4,915,422 to 4,916,492
_4093
Shewana3_4094: Shewana3_4094 - capsule biosynthesis phosphatase (RefSeq), at 4,916,524 to 4,916,904
_4094
Shewana3_4095: Shewana3_4095 - hypothetical protein (RefSeq), at 4,916,895 to 4,918,460
_4095
Position (kb)
4915
4916
4917 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4915.281 kb on + strand, within Shewana3_4092 at 4915.281 kb on + strand, within Shewana3_4092 at 4915.281 kb on + strand, within Shewana3_4092 at 4915.281 kb on + strand, within Shewana3_4092 at 4915.281 kb on + strand, within Shewana3_4092 at 4915.289 kb on - strand, within Shewana3_4092 at 4915.289 kb on - strand, within Shewana3_4092 at 4915.289 kb on - strand, within Shewana3_4092 at 4915.289 kb on - strand, within Shewana3_4092 at 4915.487 kb on - strand at 4915.528 kb on + strand at 4915.612 kb on + strand, within Shewana3_4093 at 4915.620 kb on - strand, within Shewana3_4093 at 4915.886 kb on + strand, within Shewana3_4093 at 4915.894 kb on - strand, within Shewana3_4093 at 4915.937 kb on - strand, within Shewana3_4093 at 4915.939 kb on - strand, within Shewana3_4093 at 4915.969 kb on - strand, within Shewana3_4093 at 4916.000 kb on + strand, within Shewana3_4093 at 4916.068 kb on + strand, within Shewana3_4093 at 4916.076 kb on - strand, within Shewana3_4093 at 4916.083 kb on + strand, within Shewana3_4093 at 4916.146 kb on - strand, within Shewana3_4093 at 4916.156 kb on - strand, within Shewana3_4093 at 4916.192 kb on + strand, within Shewana3_4093 at 4916.217 kb on + strand, within Shewana3_4093 at 4916.217 kb on + strand, within Shewana3_4093 at 4916.217 kb on + strand, within Shewana3_4093 at 4916.217 kb on + strand, within Shewana3_4093 at 4916.249 kb on - strand, within Shewana3_4093 at 4916.249 kb on - strand, within Shewana3_4093 at 4916.264 kb on + strand, within Shewana3_4093 at 4916.275 kb on + strand, within Shewana3_4093 at 4916.275 kb on + strand, within Shewana3_4093 at 4916.278 kb on + strand, within Shewana3_4093 at 4916.283 kb on - strand, within Shewana3_4093 at 4916.288 kb on + strand, within Shewana3_4093 at 4916.288 kb on + strand, within Shewana3_4093 at 4916.288 kb on + strand, within Shewana3_4093 at 4916.288 kb on + strand, within Shewana3_4093 at 4916.288 kb on + strand, within Shewana3_4093 at 4916.293 kb on + strand, within Shewana3_4093 at 4916.296 kb on - strand, within Shewana3_4093 at 4916.296 kb on - strand, within Shewana3_4093 at 4916.296 kb on - strand, within Shewana3_4093 at 4916.296 kb on - strand, within Shewana3_4093 at 4916.296 kb on - strand, within Shewana3_4093 at 4916.311 kb on + strand, within Shewana3_4093 at 4916.360 kb on + strand, within Shewana3_4093 at 4916.367 kb on + strand, within Shewana3_4093 at 4916.387 kb on - strand at 4916.388 kb on + strand at 4916.388 kb on + strand at 4916.388 kb on + strand at 4916.396 kb on + strand at 4916.396 kb on - strand at 4916.396 kb on - strand at 4916.396 kb on - strand at 4916.415 kb on + strand at 4916.415 kb on + strand at 4916.415 kb on + strand at 4916.416 kb on + strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.423 kb on - strand at 4916.442 kb on + strand at 4916.442 kb on + strand at 4916.443 kb on - strand at 4916.452 kb on + strand at 4916.501 kb on + strand at 4916.552 kb on + strand at 4916.555 kb on + strand at 4916.555 kb on + strand at 4916.563 kb on - strand, within Shewana3_4094 at 4916.563 kb on - strand, within Shewana3_4094 at 4916.563 kb on - strand, within Shewana3_4094 at 4916.564 kb on - strand, within Shewana3_4094 at 4916.565 kb on + strand, within Shewana3_4094 at 4916.565 kb on + strand, within Shewana3_4094 at 4916.565 kb on + strand, within Shewana3_4094 at 4916.565 kb on + strand, within Shewana3_4094 at 4916.565 kb on + strand, within Shewana3_4094 at 4916.573 kb on - strand, within Shewana3_4094 at 4916.573 kb on - strand, within Shewana3_4094 at 4916.573 kb on - strand, within Shewana3_4094 at 4916.595 kb on + strand, within Shewana3_4094 at 4916.619 kb on + strand, within Shewana3_4094 at 4916.642 kb on + strand, within Shewana3_4094 at 4916.787 kb on - strand, within Shewana3_4094 at 4916.889 kb on + strand at 4916.914 kb on + strand at 4916.914 kb on + strand at 4916.914 kb on + strand at 4916.922 kb on - strand at 4916.922 kb on - strand at 4916.933 kb on + strand at 4916.941 kb on - strand at 4916.945 kb on + strand at 4916.965 kb on + strand at 4916.965 kb on + strand at 4916.973 kb on + strand at 4916.973 kb on - strand at 4917.031 kb on + strand at 4917.031 kb on + strand at 4917.031 kb on + strand at 4917.031 kb on + strand at 4917.063 kb on - strand, within Shewana3_4095 at 4917.074 kb on + strand, within Shewana3_4095 at 4917.079 kb on + strand, within Shewana3_4095 at 4917.082 kb on - strand, within Shewana3_4095 at 4917.082 kb on - strand, within Shewana3_4095 at 4917.120 kb on + strand, within Shewana3_4095 at 4917.120 kb on + strand, within Shewana3_4095 at 4917.120 kb on + strand, within Shewana3_4095 at 4917.120 kb on + strand, within Shewana3_4095 at 4917.128 kb on - strand, within Shewana3_4095 at 4917.129 kb on - strand, within Shewana3_4095 at 4917.129 kb on - strand, within Shewana3_4095 at 4917.147 kb on + strand, within Shewana3_4095 at 4917.147 kb on + strand, within Shewana3_4095 at 4917.147 kb on + strand, within Shewana3_4095 at 4917.150 kb on - strand, within Shewana3_4095 at 4917.155 kb on - strand, within Shewana3_4095 at 4917.156 kb on + strand, within Shewana3_4095 at 4917.156 kb on + strand, within Shewana3_4095 at 4917.156 kb on + strand, within Shewana3_4095 at 4917.164 kb on - strand, within Shewana3_4095 at 4917.164 kb on - strand, within Shewana3_4095 at 4917.171 kb on + strand, within Shewana3_4095 at 4917.218 kb on + strand, within Shewana3_4095 at 4917.222 kb on - strand, within Shewana3_4095 at 4917.229 kb on + strand, within Shewana3_4095 at 4917.237 kb on - strand, within Shewana3_4095 at 4917.257 kb on + strand, within Shewana3_4095 at 4917.265 kb on - strand, within Shewana3_4095 at 4917.274 kb on + strand, within Shewana3_4095 at 4917.281 kb on - strand, within Shewana3_4095 at 4917.332 kb on + strand, within Shewana3_4095 at 4917.396 kb on - strand, within Shewana3_4095 at 4917.415 kb on + strand, within Shewana3_4095 at 4917.485 kb on + strand, within Shewana3_4095
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,915,281 + Shewana3_4092 0.49 +0.3 4,915,281 + Shewana3_4092 0.49 +0.2 4,915,281 + Shewana3_4092 0.49 -0.4 4,915,281 + Shewana3_4092 0.49 -0.2 4,915,281 + Shewana3_4092 0.49 +0.6 4,915,289 - Shewana3_4092 0.52 -0.1 4,915,289 - Shewana3_4092 0.52 +1.0 4,915,289 - Shewana3_4092 0.52 +0.6 4,915,289 - Shewana3_4092 0.52 -0.1 4,915,487 - -2.7 4,915,528 + -2.7 4,915,612 + Shewana3_4093 0.18 -0.7 4,915,620 - Shewana3_4093 0.18 -1.6 4,915,886 + Shewana3_4093 0.43 -0.5 4,915,894 - Shewana3_4093 0.44 -3.1 4,915,937 - Shewana3_4093 0.48 -2.5 4,915,939 - Shewana3_4093 0.48 -1.8 4,915,969 - Shewana3_4093 0.51 -2.5 4,916,000 + Shewana3_4093 0.54 -2.4 4,916,068 + Shewana3_4093 0.60 -1.0 4,916,076 - Shewana3_4093 0.61 -2.2 4,916,083 + Shewana3_4093 0.62 -1.5 4,916,146 - Shewana3_4093 0.68 -2.0 4,916,156 - Shewana3_4093 0.69 -2.3 4,916,192 + Shewana3_4093 0.72 -1.7 4,916,217 + Shewana3_4093 0.74 -3.1 4,916,217 + Shewana3_4093 0.74 -2.4 4,916,217 + Shewana3_4093 0.74 -2.4 4,916,217 + Shewana3_4093 0.74 -2.0 4,916,249 - Shewana3_4093 0.77 -1.1 4,916,249 - Shewana3_4093 0.77 -3.9 4,916,264 + Shewana3_4093 0.79 -2.9 4,916,275 + Shewana3_4093 0.80 -3.5 4,916,275 + Shewana3_4093 0.80 -1.6 4,916,278 + Shewana3_4093 0.80 -2.5 4,916,283 - Shewana3_4093 0.80 -1.8 4,916,288 + Shewana3_4093 0.81 -1.3 4,916,288 + Shewana3_4093 0.81 -1.5 4,916,288 + Shewana3_4093 0.81 -3.5 4,916,288 + Shewana3_4093 0.81 -0.3 4,916,288 + Shewana3_4093 0.81 +0.4 4,916,293 + Shewana3_4093 0.81 -1.5 4,916,296 - Shewana3_4093 0.82 -1.4 4,916,296 - Shewana3_4093 0.82 -0.9 4,916,296 - Shewana3_4093 0.82 -2.4 4,916,296 - Shewana3_4093 0.82 -2.4 4,916,296 - Shewana3_4093 0.82 -0.2 4,916,311 + Shewana3_4093 0.83 -2.6 4,916,360 + Shewana3_4093 0.88 -2.6 4,916,367 + Shewana3_4093 0.88 -2.8 4,916,387 - -2.8 4,916,388 + -0.7 4,916,388 + +0.2 4,916,388 + -1.2 4,916,396 + -0.6 4,916,396 - -1.0 4,916,396 - -3.3 4,916,396 - -2.8 4,916,415 + -1.9 4,916,415 + -2.3 4,916,415 + -2.8 4,916,416 + -0.8 4,916,423 - -2.2 4,916,423 - -0.2 4,916,423 - -1.0 4,916,423 - -0.9 4,916,423 - -3.5 4,916,423 - -3.5 4,916,423 - -2.8 4,916,423 - -2.0 4,916,442 + -1.0 4,916,442 + -1.3 4,916,443 - -1.2 4,916,452 + +0.1 4,916,501 + +0.0 4,916,552 + +1.3 4,916,555 + +0.6 4,916,555 + +0.3 4,916,563 - Shewana3_4094 0.10 -1.6 4,916,563 - Shewana3_4094 0.10 -0.8 4,916,563 - Shewana3_4094 0.10 +0.2 4,916,564 - Shewana3_4094 0.10 -3.5 4,916,565 + Shewana3_4094 0.11 +0.2 4,916,565 + Shewana3_4094 0.11 +0.9 4,916,565 + Shewana3_4094 0.11 +0.6 4,916,565 + Shewana3_4094 0.11 +0.0 4,916,565 + Shewana3_4094 0.11 +0.8 4,916,573 - Shewana3_4094 0.13 -1.0 4,916,573 - Shewana3_4094 0.13 -0.9 4,916,573 - Shewana3_4094 0.13 -0.4 4,916,595 + Shewana3_4094 0.19 +1.2 4,916,619 + Shewana3_4094 0.25 +0.2 4,916,642 + Shewana3_4094 0.31 -0.1 4,916,787 - Shewana3_4094 0.69 -2.3 4,916,889 + +1.1 4,916,914 + -4.0 4,916,914 + -1.2 4,916,914 + -1.6 4,916,922 - -0.8 4,916,922 - -1.7 4,916,933 + -1.3 4,916,941 - +1.8 4,916,945 + -1.4 4,916,965 + -1.3 4,916,965 + -1.8 4,916,973 + +0.9 4,916,973 - -3.9 4,917,031 + -2.9 4,917,031 + +0.2 4,917,031 + -0.2 4,917,031 + -0.8 4,917,063 - Shewana3_4095 0.11 +1.7 4,917,074 + Shewana3_4095 0.11 +1.0 4,917,079 + Shewana3_4095 0.12 -1.3 4,917,082 - Shewana3_4095 0.12 -1.5 4,917,082 - Shewana3_4095 0.12 -1.1 4,917,120 + Shewana3_4095 0.14 +0.7 4,917,120 + Shewana3_4095 0.14 -2.1 4,917,120 + Shewana3_4095 0.14 -3.3 4,917,120 + Shewana3_4095 0.14 -0.2 4,917,128 - Shewana3_4095 0.15 -2.9 4,917,129 - Shewana3_4095 0.15 -1.4 4,917,129 - Shewana3_4095 0.15 -1.8 4,917,147 + Shewana3_4095 0.16 +0.0 4,917,147 + Shewana3_4095 0.16 +1.0 4,917,147 + Shewana3_4095 0.16 -1.4 4,917,150 - Shewana3_4095 0.16 -0.2 4,917,155 - Shewana3_4095 0.17 -1.8 4,917,156 + Shewana3_4095 0.17 -0.9 4,917,156 + Shewana3_4095 0.17 -2.2 4,917,156 + Shewana3_4095 0.17 -2.3 4,917,164 - Shewana3_4095 0.17 -1.9 4,917,164 - Shewana3_4095 0.17 -0.5 4,917,171 + Shewana3_4095 0.18 -0.1 4,917,218 + Shewana3_4095 0.21 +0.4 4,917,222 - Shewana3_4095 0.21 -1.3 4,917,229 + Shewana3_4095 0.21 -1.5 4,917,237 - Shewana3_4095 0.22 -0.0 4,917,257 + Shewana3_4095 0.23 -2.2 4,917,265 - Shewana3_4095 0.24 -1.9 4,917,274 + Shewana3_4095 0.24 -2.5 4,917,281 - Shewana3_4095 0.25 -0.2 4,917,332 + Shewana3_4095 0.28 +0.7 4,917,396 - Shewana3_4095 0.32 -0.8 4,917,415 + Shewana3_4095 0.33 -0.4 4,917,485 + Shewana3_4095 0.38 -1.6
Or see this region's nucleotide sequence