Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4091

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4090 and coaD are separated by 66 nucleotidescoaD and Shewana3_4092 are separated by 33 nucleotidesShewana3_4092 and Shewana3_4093 are separated by 33 nucleotides Shewana3_4090: Shewana3_4090 - hypothetical protein (RefSeq), at 4,913,115 to 4,914,587 _4090 Shewana3_4091: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 4,914,654 to 4,915,145 coaD Shewana3_4092: Shewana3_4092 - hypothetical protein (RefSeq), at 4,915,179 to 4,915,388 _4092 Shewana3_4093: Shewana3_4093 - glycosyl transferase, group 1 (RefSeq), at 4,915,422 to 4,916,492 _4093 Position (kb) 4914 4915 4916Strain fitness (log2 ratio) -3 -2 -1 0 1at 4915.281 kb on + strand, within Shewana3_4092at 4915.281 kb on + strand, within Shewana3_4092at 4915.281 kb on + strand, within Shewana3_4092at 4915.281 kb on + strand, within Shewana3_4092at 4915.281 kb on + strand, within Shewana3_4092at 4915.289 kb on - strand, within Shewana3_4092at 4915.289 kb on - strand, within Shewana3_4092at 4915.289 kb on - strand, within Shewana3_4092at 4915.289 kb on - strand, within Shewana3_4092at 4915.487 kb on - strandat 4915.528 kb on + strandat 4915.612 kb on + strand, within Shewana3_4093at 4915.620 kb on - strand, within Shewana3_4093at 4915.886 kb on + strand, within Shewana3_4093at 4915.894 kb on - strand, within Shewana3_4093at 4915.937 kb on - strand, within Shewana3_4093at 4915.939 kb on - strand, within Shewana3_4093at 4915.969 kb on - strand, within Shewana3_4093at 4916.000 kb on + strand, within Shewana3_4093at 4916.068 kb on + strand, within Shewana3_4093at 4916.076 kb on - strand, within Shewana3_4093at 4916.083 kb on + strand, within Shewana3_4093

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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4,915,281 + Shewana3_4092 0.49 +0.3
4,915,281 + Shewana3_4092 0.49 +0.2
4,915,281 + Shewana3_4092 0.49 -0.4
4,915,281 + Shewana3_4092 0.49 -0.2
4,915,281 + Shewana3_4092 0.49 +0.6
4,915,289 - Shewana3_4092 0.52 -0.1
4,915,289 - Shewana3_4092 0.52 +1.0
4,915,289 - Shewana3_4092 0.52 +0.6
4,915,289 - Shewana3_4092 0.52 -0.1
4,915,487 - -2.7
4,915,528 + -2.7
4,915,612 + Shewana3_4093 0.18 -0.7
4,915,620 - Shewana3_4093 0.18 -1.6
4,915,886 + Shewana3_4093 0.43 -0.5
4,915,894 - Shewana3_4093 0.44 -3.1
4,915,937 - Shewana3_4093 0.48 -2.5
4,915,939 - Shewana3_4093 0.48 -1.8
4,915,969 - Shewana3_4093 0.51 -2.5
4,916,000 + Shewana3_4093 0.54 -2.4
4,916,068 + Shewana3_4093 0.60 -1.0
4,916,076 - Shewana3_4093 0.61 -2.2
4,916,083 + Shewana3_4093 0.62 -1.5

Or see this region's nucleotide sequence