Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4070 and Shewana3_4071 are separated by 628 nucleotides Shewana3_4071 and Shewana3_4072 are separated by 14 nucleotides Shewana3_4072 and Shewana3_4073 are separated by 248 nucleotides
Shewana3_4070: Shewana3_4070 - ABC transporter related (RefSeq), at 4,890,793 to 4,892,157
_4070
Shewana3_4071: Shewana3_4071 - isochorismate synthases (RefSeq), at 4,892,786 to 4,894,144
_4071
Shewana3_4072: Shewana3_4072 - hypothetical protein (RefSeq), at 4,894,159 to 4,894,884
_4072
Shewana3_4073: Shewana3_4073 - hypothetical protein (RefSeq), at 4,895,133 to 4,895,786
_4073
Position (kb)
4892
4893
4894
4895 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4891.841 kb on + strand, within Shewana3_4070 at 4891.877 kb on - strand, within Shewana3_4070 at 4891.899 kb on + strand, within Shewana3_4070 at 4892.000 kb on + strand, within Shewana3_4070 at 4892.059 kb on + strand at 4892.059 kb on + strand at 4892.067 kb on - strand at 4892.067 kb on - strand at 4892.335 kb on + strand at 4892.350 kb on + strand at 4892.384 kb on - strand at 4892.398 kb on + strand at 4892.398 kb on + strand at 4892.398 kb on + strand at 4892.757 kb on + strand at 4892.793 kb on + strand at 4892.801 kb on - strand at 4892.801 kb on - strand at 4892.811 kb on + strand at 4892.812 kb on + strand at 4892.820 kb on - strand at 4893.054 kb on - strand, within Shewana3_4071 at 4893.158 kb on + strand, within Shewana3_4071 at 4893.292 kb on - strand, within Shewana3_4071 at 4893.371 kb on - strand, within Shewana3_4071 at 4893.563 kb on - strand, within Shewana3_4071 at 4893.658 kb on - strand, within Shewana3_4071 at 4893.658 kb on - strand, within Shewana3_4071 at 4893.663 kb on - strand, within Shewana3_4071 at 4893.822 kb on + strand, within Shewana3_4071 at 4893.881 kb on - strand, within Shewana3_4071 at 4893.932 kb on + strand, within Shewana3_4071 at 4893.940 kb on - strand, within Shewana3_4071 at 4893.940 kb on - strand, within Shewana3_4071 at 4894.313 kb on - strand, within Shewana3_4072 at 4894.519 kb on + strand, within Shewana3_4072 at 4894.523 kb on + strand, within Shewana3_4072 at 4894.527 kb on - strand, within Shewana3_4072 at 4894.637 kb on - strand, within Shewana3_4072 at 4894.649 kb on + strand, within Shewana3_4072 at 4894.693 kb on - strand, within Shewana3_4072 at 4894.693 kb on - strand, within Shewana3_4072 at 4894.910 kb on + strand at 4894.910 kb on - strand at 4894.918 kb on - strand at 4894.934 kb on + strand at 4895.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,891,841 + Shewana3_4070 0.77 +0.4 4,891,877 - Shewana3_4070 0.79 -1.5 4,891,899 + Shewana3_4070 0.81 +0.1 4,892,000 + Shewana3_4070 0.88 -1.1 4,892,059 + -3.3 4,892,059 + +0.8 4,892,067 - +0.1 4,892,067 - +0.8 4,892,335 + +0.9 4,892,350 + +0.3 4,892,384 - +1.7 4,892,398 + +0.0 4,892,398 + -0.9 4,892,398 + +0.7 4,892,757 + -0.8 4,892,793 + -2.5 4,892,801 - +0.3 4,892,801 - -1.0 4,892,811 + -0.2 4,892,812 + -0.3 4,892,820 - -1.1 4,893,054 - Shewana3_4071 0.20 -0.5 4,893,158 + Shewana3_4071 0.27 -0.4 4,893,292 - Shewana3_4071 0.37 -0.3 4,893,371 - Shewana3_4071 0.43 -0.9 4,893,563 - Shewana3_4071 0.57 -1.5 4,893,658 - Shewana3_4071 0.64 +0.1 4,893,658 - Shewana3_4071 0.64 -0.4 4,893,663 - Shewana3_4071 0.65 -1.3 4,893,822 + Shewana3_4071 0.76 +0.5 4,893,881 - Shewana3_4071 0.81 +1.0 4,893,932 + Shewana3_4071 0.84 -0.1 4,893,940 - Shewana3_4071 0.85 -1.4 4,893,940 - Shewana3_4071 0.85 +0.2 4,894,313 - Shewana3_4072 0.21 -1.9 4,894,519 + Shewana3_4072 0.50 +0.8 4,894,523 + Shewana3_4072 0.50 -1.2 4,894,527 - Shewana3_4072 0.51 -1.3 4,894,637 - Shewana3_4072 0.66 -0.4 4,894,649 + Shewana3_4072 0.67 -0.3 4,894,693 - Shewana3_4072 0.74 -0.3 4,894,693 - Shewana3_4072 0.74 -0.7 4,894,910 + +1.4 4,894,910 - +0.2 4,894,918 - +1.2 4,894,934 + -0.6 4,895,109 - -0.1
Or see this region's nucleotide sequence