Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3967 and Shewana3_3968 are separated by 6 nucleotides Shewana3_3968 and Shewana3_3969 are separated by 59 nucleotides
Shewana3_3967: Shewana3_3967 - O-succinylbenzoate synthase (RefSeq), at 4,765,686 to 4,766,735
_3967
Shewana3_3968: Shewana3_3968 - O-succinylbenzoate-CoA ligase (RefSeq), at 4,766,742 to 4,768,205
_3968
Shewana3_3969: Shewana3_3969 - RNA polymerase factor sigma-32 (RefSeq), at 4,768,265 to 4,769,122
_3969
Position (kb)
4766
4767
4768
4769 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4765.776 kb on + strand at 4765.804 kb on - strand, within Shewana3_3967 at 4765.906 kb on + strand, within Shewana3_3967 at 4766.010 kb on + strand, within Shewana3_3967 at 4766.011 kb on + strand, within Shewana3_3967 at 4766.018 kb on - strand, within Shewana3_3967 at 4766.190 kb on - strand, within Shewana3_3967 at 4766.244 kb on - strand, within Shewana3_3967 at 4766.272 kb on + strand, within Shewana3_3967 at 4766.388 kb on + strand, within Shewana3_3967 at 4766.390 kb on - strand, within Shewana3_3967 at 4766.517 kb on + strand, within Shewana3_3967 at 4766.655 kb on + strand at 4766.663 kb on - strand at 4766.686 kb on + strand at 4766.814 kb on + strand at 4766.822 kb on - strand at 4766.936 kb on - strand, within Shewana3_3968 at 4766.984 kb on + strand, within Shewana3_3968 at 4767.059 kb on - strand, within Shewana3_3968 at 4767.145 kb on - strand, within Shewana3_3968 at 4767.173 kb on + strand, within Shewana3_3968 at 4767.228 kb on - strand, within Shewana3_3968 at 4767.534 kb on - strand, within Shewana3_3968 at 4767.752 kb on + strand, within Shewana3_3968 at 4767.896 kb on + strand, within Shewana3_3968 at 4768.056 kb on - strand, within Shewana3_3968 at 4768.056 kb on - strand, within Shewana3_3968 at 4768.123 kb on - strand at 4768.134 kb on - strand at 4768.289 kb on - strand at 4769.199 kb on - strand at 4769.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,765,776 + -0.8 4,765,804 - Shewana3_3967 0.11 -0.9 4,765,906 + Shewana3_3967 0.21 -1.6 4,766,010 + Shewana3_3967 0.31 -1.9 4,766,011 + Shewana3_3967 0.31 -0.1 4,766,018 - Shewana3_3967 0.32 -1.2 4,766,190 - Shewana3_3967 0.48 -1.1 4,766,244 - Shewana3_3967 0.53 -0.8 4,766,272 + Shewana3_3967 0.56 -1.5 4,766,388 + Shewana3_3967 0.67 -0.8 4,766,390 - Shewana3_3967 0.67 -0.9 4,766,517 + Shewana3_3967 0.79 -0.9 4,766,655 + -1.2 4,766,663 - -1.0 4,766,686 + +1.0 4,766,814 + -1.9 4,766,822 - -2.8 4,766,936 - Shewana3_3968 0.13 -2.0 4,766,984 + Shewana3_3968 0.17 -1.1 4,767,059 - Shewana3_3968 0.22 -0.8 4,767,145 - Shewana3_3968 0.28 -1.7 4,767,173 + Shewana3_3968 0.29 -1.3 4,767,228 - Shewana3_3968 0.33 -0.0 4,767,534 - Shewana3_3968 0.54 -2.1 4,767,752 + Shewana3_3968 0.69 -1.3 4,767,896 + Shewana3_3968 0.79 -3.1 4,768,056 - Shewana3_3968 0.90 -1.2 4,768,056 - Shewana3_3968 0.90 -3.0 4,768,123 - +0.1 4,768,134 - -1.6 4,768,289 - +0.2 4,769,199 - -2.5 4,769,199 - -1.0
Or see this region's nucleotide sequence