Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3911 and Shewana3_3912 overlap by 1 nucleotides Shewana3_3912 and Shewana3_3913 are separated by 186 nucleotides Shewana3_3913 and Shewana3_3914 are separated by 10 nucleotides Shewana3_3914 and Shewana3_3915 are separated by 167 nucleotides
Shewana3_3911: Shewana3_3911 - hypothetical protein (RefSeq), at 4,699,920 to 4,700,384
_3911
Shewana3_3912: Shewana3_3912 - hypothetical protein (RefSeq), at 4,700,384 to 4,701,052
_3912
Shewana3_3913: Shewana3_3913 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,701,239 to 4,702,900
_3913
Shewana3_3914: Shewana3_3914 - cytoplasmic chaperone TorD family protein (RefSeq), at 4,702,911 to 4,703,588
_3914
Shewana3_3915: Shewana3_3915 - hypothetical protein (RefSeq), at 4,703,756 to 4,703,953
_3915
Position (kb)
4701
4702
4703 Strain fitness (log2 ratio)
-2
-1
0
1 at 4700.277 kb on - strand, within Shewana3_3911 at 4700.444 kb on - strand at 4700.665 kb on + strand, within Shewana3_3912 at 4700.682 kb on - strand, within Shewana3_3912 at 4700.761 kb on - strand, within Shewana3_3912 at 4700.785 kb on + strand, within Shewana3_3912 at 4700.870 kb on + strand, within Shewana3_3912 at 4701.010 kb on - strand at 4701.209 kb on + strand at 4701.353 kb on + strand at 4701.475 kb on + strand, within Shewana3_3913 at 4701.483 kb on - strand, within Shewana3_3913 at 4701.639 kb on + strand, within Shewana3_3913 at 4701.648 kb on - strand, within Shewana3_3913 at 4701.802 kb on + strand, within Shewana3_3913 at 4701.896 kb on - strand, within Shewana3_3913 at 4701.986 kb on - strand, within Shewana3_3913 at 4702.069 kb on + strand, within Shewana3_3913 at 4702.118 kb on + strand, within Shewana3_3913 at 4702.159 kb on + strand, within Shewana3_3913 at 4702.292 kb on - strand, within Shewana3_3913 at 4702.371 kb on + strand, within Shewana3_3913 at 4702.391 kb on + strand, within Shewana3_3913 at 4702.418 kb on - strand, within Shewana3_3913 at 4702.513 kb on + strand, within Shewana3_3913 at 4702.522 kb on - strand, within Shewana3_3913 at 4702.755 kb on + strand at 4702.787 kb on + strand at 4703.110 kb on - strand, within Shewana3_3914 at 4703.131 kb on + strand, within Shewana3_3914 at 4703.149 kb on - strand, within Shewana3_3914 at 4703.185 kb on + strand, within Shewana3_3914 at 4703.213 kb on + strand, within Shewana3_3914 at 4703.303 kb on + strand, within Shewana3_3914 at 4703.310 kb on + strand, within Shewana3_3914 at 4703.311 kb on - strand, within Shewana3_3914 at 4703.337 kb on + strand, within Shewana3_3914 at 4703.411 kb on - strand, within Shewana3_3914 at 4703.614 kb on + strand at 4703.794 kb on + strand, within Shewana3_3915 at 4703.815 kb on - strand, within Shewana3_3915 at 4703.871 kb on + strand, within Shewana3_3915
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,700,277 - Shewana3_3911 0.77 +1.4 4,700,444 - +0.8 4,700,665 + Shewana3_3912 0.42 +0.2 4,700,682 - Shewana3_3912 0.45 +1.2 4,700,761 - Shewana3_3912 0.56 +1.4 4,700,785 + Shewana3_3912 0.60 -0.1 4,700,870 + Shewana3_3912 0.73 +0.5 4,701,010 - -0.3 4,701,209 + +0.1 4,701,353 + +0.1 4,701,475 + Shewana3_3913 0.14 -0.1 4,701,483 - Shewana3_3913 0.15 +0.1 4,701,639 + Shewana3_3913 0.24 -0.4 4,701,648 - Shewana3_3913 0.25 -0.8 4,701,802 + Shewana3_3913 0.34 +0.3 4,701,896 - Shewana3_3913 0.40 -0.9 4,701,986 - Shewana3_3913 0.45 -0.1 4,702,069 + Shewana3_3913 0.50 +0.8 4,702,118 + Shewana3_3913 0.53 +0.7 4,702,159 + Shewana3_3913 0.55 +1.6 4,702,292 - Shewana3_3913 0.63 -0.1 4,702,371 + Shewana3_3913 0.68 -1.2 4,702,391 + Shewana3_3913 0.69 -0.3 4,702,418 - Shewana3_3913 0.71 +0.2 4,702,513 + Shewana3_3913 0.77 +0.1 4,702,522 - Shewana3_3913 0.77 +0.2 4,702,755 + +0.3 4,702,787 + -0.2 4,703,110 - Shewana3_3914 0.29 +0.3 4,703,131 + Shewana3_3914 0.32 -0.0 4,703,149 - Shewana3_3914 0.35 +1.1 4,703,185 + Shewana3_3914 0.40 +0.8 4,703,213 + Shewana3_3914 0.45 +1.1 4,703,303 + Shewana3_3914 0.58 +0.9 4,703,310 + Shewana3_3914 0.59 +1.0 4,703,311 - Shewana3_3914 0.59 -1.8 4,703,337 + Shewana3_3914 0.63 +0.4 4,703,411 - Shewana3_3914 0.74 -0.0 4,703,614 + +0.2 4,703,794 + Shewana3_3915 0.19 +1.5 4,703,815 - Shewana3_3915 0.30 +0.1 4,703,871 + Shewana3_3915 0.58 -1.4
Or see this region's nucleotide sequence