Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3877 and Shewana3_3878 are separated by 132 nucleotides Shewana3_3878 and rnpB are separated by 131 nucleotides rnpB and Shewana3_3879 are separated by 113 nucleotides
Shewana3_3877: Shewana3_3877 - hypothetical protein (RefSeq), at 4,656,538 to 4,658,178
_3877
Shewana3_3878: Shewana3_3878 - hypothetical protein (RefSeq), at 4,658,311 to 4,658,817
_3878
Shewana3_R0137: rnpB - RNA component of RNaseP (NCBI), at 4,658,949 to 4,659,248
rnpB
Shewana3_3879: Shewana3_3879 - hypothetical protein (RefSeq), at 4,659,362 to 4,660,207
_3879
Position (kb)
4658
4659 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4657.409 kb on + strand, within Shewana3_3877 at 4657.424 kb on - strand, within Shewana3_3877 at 4657.446 kb on - strand, within Shewana3_3877 at 4657.486 kb on - strand, within Shewana3_3877 at 4657.607 kb on - strand, within Shewana3_3877 at 4657.668 kb on - strand, within Shewana3_3877 at 4657.883 kb on + strand, within Shewana3_3877 at 4657.994 kb on - strand, within Shewana3_3877 at 4658.118 kb on - strand at 4658.133 kb on + strand at 4658.452 kb on + strand, within Shewana3_3878 at 4658.470 kb on + strand, within Shewana3_3878 at 4658.484 kb on - strand, within Shewana3_3878 at 4658.551 kb on + strand, within Shewana3_3878 at 4658.871 kb on + strand at 4659.339 kb on - strand at 4659.392 kb on - strand at 4659.454 kb on + strand, within Shewana3_3879 at 4659.562 kb on + strand, within Shewana3_3879 at 4659.668 kb on + strand, within Shewana3_3879 at 4659.697 kb on - strand, within Shewana3_3879 at 4659.748 kb on + strand, within Shewana3_3879 at 4659.800 kb on - strand, within Shewana3_3879
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,657,409 + Shewana3_3877 0.53 -1.2 4,657,424 - Shewana3_3877 0.54 -0.2 4,657,446 - Shewana3_3877 0.55 -0.1 4,657,486 - Shewana3_3877 0.58 +0.1 4,657,607 - Shewana3_3877 0.65 -1.1 4,657,668 - Shewana3_3877 0.69 +0.1 4,657,883 + Shewana3_3877 0.82 +0.7 4,657,994 - Shewana3_3877 0.89 -0.0 4,658,118 - +1.2 4,658,133 + -0.1 4,658,452 + Shewana3_3878 0.28 -0.8 4,658,470 + Shewana3_3878 0.31 -0.1 4,658,484 - Shewana3_3878 0.34 -1.0 4,658,551 + Shewana3_3878 0.47 -1.2 4,658,871 + -0.4 4,659,339 - +0.1 4,659,392 - +0.4 4,659,454 + Shewana3_3879 0.11 -2.9 4,659,562 + Shewana3_3879 0.24 -3.4 4,659,668 + Shewana3_3879 0.36 -1.0 4,659,697 - Shewana3_3879 0.40 -1.4 4,659,748 + Shewana3_3879 0.46 -2.7 4,659,800 - Shewana3_3879 0.52 -4.2
Or see this region's nucleotide sequence