Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3763 and Shewana3_3764 are separated by 273 nucleotides Shewana3_3764 and Shewana3_3765 are separated by 215 nucleotides Shewana3_3765 and Shewana3_3766 are separated by 59 nucleotides Shewana3_3766 and Shewana3_3767 are separated by 103 nucleotides
Shewana3_3763: Shewana3_3763 - ATP-dependent DNA helicase RecQ (RefSeq), at 4,523,799 to 4,525,622
_3763
Shewana3_3764: Shewana3_3764 - hypothetical protein (RefSeq), at 4,525,896 to 4,526,360
_3764
Shewana3_3765: Shewana3_3765 - transporter DMT superfamily protein (RefSeq), at 4,526,576 to 4,527,463
_3765
Shewana3_3766: Shewana3_3766 - hypothetical protein (RefSeq), at 4,527,523 to 4,528,041
_3766
Shewana3_3767: Shewana3_3767 - N-acetylglutamate synthase (RefSeq), at 4,528,145 to 4,529,482
_3767
Position (kb)
4526
4527
4528 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4525.576 kb on - strand at 4525.576 kb on - strand at 4525.647 kb on - strand at 4525.677 kb on + strand at 4525.849 kb on + strand at 4525.859 kb on + strand at 4525.869 kb on + strand at 4526.102 kb on + strand, within Shewana3_3764 at 4526.130 kb on - strand, within Shewana3_3764 at 4526.140 kb on + strand, within Shewana3_3764 at 4526.255 kb on - strand, within Shewana3_3764 at 4526.300 kb on + strand, within Shewana3_3764 at 4526.515 kb on + strand at 4526.628 kb on + strand at 4526.726 kb on - strand, within Shewana3_3765 at 4526.883 kb on + strand, within Shewana3_3765 at 4527.026 kb on - strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.164 kb on + strand, within Shewana3_3765 at 4527.172 kb on - strand, within Shewana3_3765 at 4527.332 kb on + strand, within Shewana3_3765 at 4527.340 kb on - strand, within Shewana3_3765 at 4527.506 kb on + strand at 4527.520 kb on - strand at 4527.520 kb on - strand at 4527.520 kb on - strand at 4527.574 kb on - strand at 4527.638 kb on + strand, within Shewana3_3766 at 4527.695 kb on + strand, within Shewana3_3766 at 4527.702 kb on + strand, within Shewana3_3766 at 4527.702 kb on + strand, within Shewana3_3766 at 4527.732 kb on + strand, within Shewana3_3766 at 4527.740 kb on - strand, within Shewana3_3766 at 4527.821 kb on + strand, within Shewana3_3766 at 4527.933 kb on + strand, within Shewana3_3766 at 4527.940 kb on - strand, within Shewana3_3766 at 4527.940 kb on - strand, within Shewana3_3766 at 4528.261 kb on - strand at 4528.331 kb on - strand, within Shewana3_3767 at 4528.395 kb on + strand, within Shewana3_3767 at 4528.413 kb on + strand, within Shewana3_3767 at 4528.430 kb on + strand, within Shewana3_3767 at 4528.438 kb on - strand, within Shewana3_3767 at 4528.438 kb on - strand, within Shewana3_3767
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,525,576 - -2.0 4,525,576 - -1.1 4,525,647 - +3.0 4,525,677 + -1.2 4,525,849 + -0.7 4,525,859 + +0.1 4,525,869 + -0.4 4,526,102 + Shewana3_3764 0.44 -0.1 4,526,130 - Shewana3_3764 0.50 -0.0 4,526,140 + Shewana3_3764 0.52 +0.3 4,526,255 - Shewana3_3764 0.77 -1.6 4,526,300 + Shewana3_3764 0.87 +1.7 4,526,515 + -2.2 4,526,628 + +1.7 4,526,726 - Shewana3_3765 0.17 -0.1 4,526,883 + Shewana3_3765 0.35 -0.4 4,527,026 - Shewana3_3765 0.51 -3.4 4,527,164 + Shewana3_3765 0.66 -0.8 4,527,164 + Shewana3_3765 0.66 -1.4 4,527,164 + Shewana3_3765 0.66 -1.0 4,527,172 - Shewana3_3765 0.67 -1.1 4,527,332 + Shewana3_3765 0.85 -0.1 4,527,340 - Shewana3_3765 0.86 -0.4 4,527,506 + -0.7 4,527,520 - -0.4 4,527,520 - +0.6 4,527,520 - -0.3 4,527,574 - +0.8 4,527,638 + Shewana3_3766 0.22 -0.9 4,527,695 + Shewana3_3766 0.33 -0.1 4,527,702 + Shewana3_3766 0.34 -0.8 4,527,702 + Shewana3_3766 0.34 -0.2 4,527,732 + Shewana3_3766 0.40 -2.4 4,527,740 - Shewana3_3766 0.42 -0.2 4,527,821 + Shewana3_3766 0.57 -0.8 4,527,933 + Shewana3_3766 0.79 +0.2 4,527,940 - Shewana3_3766 0.80 +0.1 4,527,940 - Shewana3_3766 0.80 -1.5 4,528,261 - +0.5 4,528,331 - Shewana3_3767 0.14 +0.5 4,528,395 + Shewana3_3767 0.19 -3.0 4,528,413 + Shewana3_3767 0.20 -0.9 4,528,430 + Shewana3_3767 0.21 -2.7 4,528,438 - Shewana3_3767 0.22 +0.6 4,528,438 - Shewana3_3767 0.22 +0.4
Or see this region's nucleotide sequence