Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3670

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3669 and rpmE are separated by 511 nucleotidesrpmE and Shewana3_3671 are separated by 165 nucleotides Shewana3_3669: Shewana3_3669 - malic enzyme, NAD-binding (RefSeq), at 4,406,608 to 4,407,852 _3669 Shewana3_3670: rpmE - 50S ribosomal protein L31 (RefSeq), at 4,408,364 to 4,408,576 rpmE Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917 _3671 Position (kb) 4408 4409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4407.664 kb on + strand, within Shewana3_3669at 4407.850 kb on + strandat 4407.890 kb on - strandat 4407.928 kb on + strandat 4407.946 kb on - strandat 4407.951 kb on + strandat 4407.951 kb on + strandat 4408.099 kb on + strandat 4408.823 kb on + strandat 4408.875 kb on + strand, within Shewana3_3671at 4409.061 kb on + strand, within Shewana3_3671at 4409.088 kb on + strand, within Shewana3_3671at 4409.088 kb on + strand, within Shewana3_3671at 4409.157 kb on + strand, within Shewana3_3671at 4409.172 kb on + strand, within Shewana3_3671at 4409.172 kb on + strand, within Shewana3_3671at 4409.180 kb on - strand, within Shewana3_3671at 4409.180 kb on - strand, within Shewana3_3671at 4409.202 kb on + strand, within Shewana3_3671at 4409.210 kb on - strand, within Shewana3_3671at 4409.230 kb on - strand, within Shewana3_3671at 4409.230 kb on - strand, within Shewana3_3671at 4409.307 kb on + strand, within Shewana3_3671at 4409.307 kb on + strand, within Shewana3_3671at 4409.549 kb on + strand, within Shewana3_3671

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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4,407,664 + Shewana3_3669 0.85 -2.2
4,407,850 + -1.5
4,407,890 - -1.5
4,407,928 + -4.5
4,407,946 - -1.2
4,407,951 + -3.0
4,407,951 + -2.4
4,408,099 + +0.1
4,408,823 + -0.3
4,408,875 + Shewana3_3671 0.11 -0.7
4,409,061 + Shewana3_3671 0.27 -0.1
4,409,088 + Shewana3_3671 0.29 -0.4
4,409,088 + Shewana3_3671 0.29 -0.0
4,409,157 + Shewana3_3671 0.35 +0.4
4,409,172 + Shewana3_3671 0.37 -4.7
4,409,172 + Shewana3_3671 0.37 -1.0
4,409,180 - Shewana3_3671 0.37 +2.4
4,409,180 - Shewana3_3671 0.37 +1.3
4,409,202 + Shewana3_3671 0.39 -0.3
4,409,210 - Shewana3_3671 0.40 +0.6
4,409,230 - Shewana3_3671 0.41 -0.4
4,409,230 - Shewana3_3671 0.41 -0.3
4,409,307 + Shewana3_3671 0.48 -0.2
4,409,307 + Shewana3_3671 0.48 +1.3
4,409,549 + Shewana3_3671 0.69 +0.7

Or see this region's nucleotide sequence