Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3583 and Shewana3_3584 are separated by 156 nucleotides Shewana3_3584 and Shewana3_3585 are separated by 65 nucleotides
Shewana3_3583: Shewana3_3583 - serine/threonine protein kinase (RefSeq), at 4,299,462 to 4,300,823
_3583
Shewana3_3584: Shewana3_3584 - MltD domain-containing protein (RefSeq), at 4,300,980 to 4,302,404
_3584
Shewana3_3585: Shewana3_3585 - hypothetical protein (RefSeq), at 4,302,470 to 4,303,843
_3585
Position (kb)
4300
4301
4302
4303 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4300.105 kb on - strand, within Shewana3_3583 at 4300.296 kb on - strand, within Shewana3_3583 at 4300.296 kb on - strand, within Shewana3_3583 at 4300.378 kb on - strand, within Shewana3_3583 at 4300.429 kb on + strand, within Shewana3_3583 at 4300.447 kb on + strand, within Shewana3_3583 at 4300.595 kb on - strand, within Shewana3_3583 at 4300.796 kb on + strand at 4300.823 kb on - strand at 4300.852 kb on - strand at 4301.001 kb on + strand at 4301.010 kb on - strand at 4301.279 kb on + strand, within Shewana3_3584 at 4301.518 kb on - strand, within Shewana3_3584 at 4301.536 kb on + strand, within Shewana3_3584 at 4301.564 kb on - strand, within Shewana3_3584 at 4301.589 kb on - strand, within Shewana3_3584 at 4301.597 kb on - strand, within Shewana3_3584 at 4301.597 kb on - strand, within Shewana3_3584 at 4301.737 kb on + strand, within Shewana3_3584 at 4301.861 kb on - strand, within Shewana3_3584 at 4302.129 kb on - strand, within Shewana3_3584 at 4302.172 kb on + strand, within Shewana3_3584 at 4302.224 kb on - strand, within Shewana3_3584 at 4302.468 kb on + strand at 4302.490 kb on + strand at 4302.600 kb on + strand at 4302.636 kb on + strand, within Shewana3_3585 at 4302.636 kb on + strand, within Shewana3_3585 at 4302.644 kb on + strand, within Shewana3_3585 at 4302.644 kb on - strand, within Shewana3_3585 at 4302.951 kb on - strand, within Shewana3_3585 at 4303.228 kb on + strand, within Shewana3_3585 at 4303.251 kb on + strand, within Shewana3_3585 at 4303.259 kb on - strand, within Shewana3_3585 at 4303.342 kb on - strand, within Shewana3_3585 at 4303.390 kb on + strand, within Shewana3_3585
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,300,105 - Shewana3_3583 0.47 +1.4 4,300,296 - Shewana3_3583 0.61 -0.8 4,300,296 - Shewana3_3583 0.61 +0.4 4,300,378 - Shewana3_3583 0.67 -0.0 4,300,429 + Shewana3_3583 0.71 -1.8 4,300,447 + Shewana3_3583 0.72 -2.1 4,300,595 - Shewana3_3583 0.83 -1.6 4,300,796 + -0.7 4,300,823 - -0.8 4,300,852 - +0.1 4,301,001 + +0.7 4,301,010 - -0.5 4,301,279 + Shewana3_3584 0.21 +0.1 4,301,518 - Shewana3_3584 0.38 +0.3 4,301,536 + Shewana3_3584 0.39 -1.6 4,301,564 - Shewana3_3584 0.41 +0.4 4,301,589 - Shewana3_3584 0.43 -0.3 4,301,597 - Shewana3_3584 0.43 +0.1 4,301,597 - Shewana3_3584 0.43 +0.3 4,301,737 + Shewana3_3584 0.53 +0.6 4,301,861 - Shewana3_3584 0.62 -0.5 4,302,129 - Shewana3_3584 0.81 -0.3 4,302,172 + Shewana3_3584 0.84 +1.1 4,302,224 - Shewana3_3584 0.87 +1.3 4,302,468 + -2.2 4,302,490 + +1.3 4,302,600 + -0.2 4,302,636 + Shewana3_3585 0.12 -0.1 4,302,636 + Shewana3_3585 0.12 -0.6 4,302,644 + Shewana3_3585 0.13 -0.4 4,302,644 - Shewana3_3585 0.13 -0.3 4,302,951 - Shewana3_3585 0.35 -0.0 4,303,228 + Shewana3_3585 0.55 +0.6 4,303,251 + Shewana3_3585 0.57 -0.7 4,303,259 - Shewana3_3585 0.57 -0.6 4,303,342 - Shewana3_3585 0.63 -0.7 4,303,390 + Shewana3_3585 0.67 +2.3
Or see this region's nucleotide sequence