Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3572 and Shewana3_3573 are separated by 177 nucleotides Shewana3_3573 and Shewana3_3574 are separated by 177 nucleotides
Shewana3_3572: Shewana3_3572 - acriflavin resistance protein (RefSeq), at 4,284,332 to 4,287,415
_3572
Shewana3_3573: Shewana3_3573 - hypothetical protein (RefSeq), at 4,287,593 to 4,287,973
_3573
Shewana3_3574: Shewana3_3574 - FxsA cytoplasmic membrane protein (RefSeq), at 4,288,151 to 4,288,771
_3574
Position (kb)
4287
4288 Strain fitness (log2 ratio)
-2
-1
0
1 at 4286.781 kb on + strand, within Shewana3_3572 at 4286.789 kb on - strand, within Shewana3_3572 at 4286.841 kb on - strand, within Shewana3_3572 at 4286.977 kb on + strand, within Shewana3_3572 at 4286.990 kb on + strand, within Shewana3_3572 at 4286.998 kb on - strand, within Shewana3_3572 at 4286.998 kb on - strand, within Shewana3_3572 at 4287.211 kb on - strand at 4287.263 kb on - strand at 4287.322 kb on - strand at 4287.468 kb on - strand at 4287.738 kb on + strand, within Shewana3_3573 at 4287.738 kb on + strand, within Shewana3_3573 at 4288.046 kb on - strand at 4288.216 kb on - strand, within Shewana3_3574 at 4288.260 kb on - strand, within Shewana3_3574 at 4288.260 kb on - strand, within Shewana3_3574 at 4288.306 kb on - strand, within Shewana3_3574 at 4288.407 kb on + strand, within Shewana3_3574 at 4288.436 kb on - strand, within Shewana3_3574 at 4288.472 kb on + strand, within Shewana3_3574 at 4288.607 kb on - strand, within Shewana3_3574 at 4288.621 kb on - strand, within Shewana3_3574 at 4288.626 kb on - strand, within Shewana3_3574 at 4288.658 kb on + strand, within Shewana3_3574 at 4288.677 kb on - strand, within Shewana3_3574 at 4288.767 kb on - strand at 4288.854 kb on + strand at 4288.862 kb on - strand at 4288.935 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,286,781 + Shewana3_3572 0.79 +1.2 4,286,789 - Shewana3_3572 0.80 -1.0 4,286,841 - Shewana3_3572 0.81 -1.7 4,286,977 + Shewana3_3572 0.86 +0.9 4,286,990 + Shewana3_3572 0.86 +1.3 4,286,998 - Shewana3_3572 0.86 -1.4 4,286,998 - Shewana3_3572 0.86 -0.0 4,287,211 - -0.8 4,287,263 - -1.2 4,287,322 - -2.1 4,287,468 - -0.7 4,287,738 + Shewana3_3573 0.38 +1.1 4,287,738 + Shewana3_3573 0.38 -0.1 4,288,046 - +0.2 4,288,216 - Shewana3_3574 0.10 -0.0 4,288,260 - Shewana3_3574 0.18 +1.4 4,288,260 - Shewana3_3574 0.18 +0.7 4,288,306 - Shewana3_3574 0.25 -0.2 4,288,407 + Shewana3_3574 0.41 +0.4 4,288,436 - Shewana3_3574 0.46 +0.6 4,288,472 + Shewana3_3574 0.52 -0.0 4,288,607 - Shewana3_3574 0.73 +0.0 4,288,621 - Shewana3_3574 0.76 +1.4 4,288,626 - Shewana3_3574 0.76 +0.5 4,288,658 + Shewana3_3574 0.82 -1.4 4,288,677 - Shewana3_3574 0.85 +0.6 4,288,767 - -0.1 4,288,854 + -0.2 4,288,862 - -1.1 4,288,935 - -0.0
Or see this region's nucleotide sequence