Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3551

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3549 and Shewana3_3550 are separated by 382 nucleotidesShewana3_3550 and Shewana3_3551 are separated by 168 nucleotidesShewana3_3551 and Shewana3_3552 are separated by 180 nucleotidesShewana3_3552 and Shewana3_3553 are separated by 190 nucleotides Shewana3_3549: Shewana3_3549 - catalase/peroxidase HPI (RefSeq), at 4,255,905 to 4,258,124 _3549 Shewana3_3550: Shewana3_3550 - hypothetical protein (RefSeq), at 4,258,507 to 4,258,758 _3550 Shewana3_3551: Shewana3_3551 - hypothetical protein (RefSeq), at 4,258,927 to 4,259,457 _3551 Shewana3_3552: Shewana3_3552 - 4-carboxymuconolactone decarboxylase (RefSeq), at 4,259,638 to 4,260,042 _3552 Shewana3_3553: Shewana3_3553 - putative nonspecific acid phosphatase precursor (RefSeq), at 4,260,233 to 4,261,216 _3553 Position (kb) 4258 4259 4260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4258.151 kb on + strandat 4258.628 kb on - strand, within Shewana3_3550at 4258.883 kb on + strandat 4258.987 kb on + strand, within Shewana3_3551at 4259.253 kb on - strand, within Shewana3_3551at 4259.367 kb on - strand, within Shewana3_3551at 4259.369 kb on + strand, within Shewana3_3551at 4259.381 kb on + strand, within Shewana3_3551at 4259.389 kb on - strand, within Shewana3_3551at 4259.413 kb on + strandat 4259.413 kb on - strandat 4259.414 kb on - strandat 4259.414 kb on - strandat 4259.469 kb on - strandat 4259.492 kb on + strandat 4259.549 kb on + strandat 4259.654 kb on + strandat 4259.654 kb on + strandat 4259.662 kb on - strandat 4259.965 kb on - strand, within Shewana3_3552at 4259.970 kb on - strand, within Shewana3_3552at 4259.970 kb on - strand, within Shewana3_3552at 4260.002 kb on - strandat 4260.009 kb on + strandat 4260.009 kb on + strandat 4260.009 kb on + strandat 4260.018 kb on - strandat 4260.111 kb on + strandat 4260.291 kb on - strandat 4260.307 kb on - strandat 4260.388 kb on + strand, within Shewana3_3553at 4260.398 kb on - strand, within Shewana3_3553

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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4,258,151 + +1.5
4,258,628 - Shewana3_3550 0.48 -2.4
4,258,883 + +0.4
4,258,987 + Shewana3_3551 0.11 -1.4
4,259,253 - Shewana3_3551 0.61 +0.1
4,259,367 - Shewana3_3551 0.83 -0.1
4,259,369 + Shewana3_3551 0.83 +0.9
4,259,381 + Shewana3_3551 0.85 -3.0
4,259,389 - Shewana3_3551 0.87 -1.1
4,259,413 + +0.0
4,259,413 - +0.4
4,259,414 - +0.9
4,259,414 - -0.6
4,259,469 - -1.3
4,259,492 + +0.0
4,259,549 + +0.1
4,259,654 + -1.0
4,259,654 + -1.1
4,259,662 - +0.3
4,259,965 - Shewana3_3552 0.81 +0.7
4,259,970 - Shewana3_3552 0.82 +0.7
4,259,970 - Shewana3_3552 0.82 +1.4
4,260,002 - +0.3
4,260,009 + -0.8
4,260,009 + -0.3
4,260,009 + +1.4
4,260,018 - +0.8
4,260,111 + +0.2
4,260,291 - +1.3
4,260,307 - +1.8
4,260,388 + Shewana3_3553 0.16 -1.2
4,260,398 - Shewana3_3553 0.17 +0.9

Or see this region's nucleotide sequence