Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3549 and Shewana3_3550 are separated by 382 nucleotides Shewana3_3550 and Shewana3_3551 are separated by 168 nucleotides Shewana3_3551 and Shewana3_3552 are separated by 180 nucleotides Shewana3_3552 and Shewana3_3553 are separated by 190 nucleotides
Shewana3_3549: Shewana3_3549 - catalase/peroxidase HPI (RefSeq), at 4,255,905 to 4,258,124
_3549
Shewana3_3550: Shewana3_3550 - hypothetical protein (RefSeq), at 4,258,507 to 4,258,758
_3550
Shewana3_3551: Shewana3_3551 - hypothetical protein (RefSeq), at 4,258,927 to 4,259,457
_3551
Shewana3_3552: Shewana3_3552 - 4-carboxymuconolactone decarboxylase (RefSeq), at 4,259,638 to 4,260,042
_3552
Shewana3_3553: Shewana3_3553 - putative nonspecific acid phosphatase precursor (RefSeq), at 4,260,233 to 4,261,216
_3553
Position (kb)
4258
4259
4260 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4258.151 kb on + strand at 4258.628 kb on - strand, within Shewana3_3550 at 4258.883 kb on + strand at 4258.987 kb on + strand, within Shewana3_3551 at 4259.253 kb on - strand, within Shewana3_3551 at 4259.367 kb on - strand, within Shewana3_3551 at 4259.369 kb on + strand, within Shewana3_3551 at 4259.381 kb on + strand, within Shewana3_3551 at 4259.389 kb on - strand, within Shewana3_3551 at 4259.413 kb on + strand at 4259.413 kb on - strand at 4259.414 kb on - strand at 4259.414 kb on - strand at 4259.469 kb on - strand at 4259.492 kb on + strand at 4259.549 kb on + strand at 4259.654 kb on + strand at 4259.654 kb on + strand at 4259.662 kb on - strand at 4259.965 kb on - strand, within Shewana3_3552 at 4259.970 kb on - strand, within Shewana3_3552 at 4259.970 kb on - strand, within Shewana3_3552 at 4260.002 kb on - strand at 4260.009 kb on + strand at 4260.009 kb on + strand at 4260.009 kb on + strand at 4260.018 kb on - strand at 4260.111 kb on + strand at 4260.291 kb on - strand at 4260.307 kb on - strand at 4260.388 kb on + strand, within Shewana3_3553 at 4260.398 kb on - strand, within Shewana3_3553
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,258,151 + +1.5 4,258,628 - Shewana3_3550 0.48 -2.4 4,258,883 + +0.4 4,258,987 + Shewana3_3551 0.11 -1.4 4,259,253 - Shewana3_3551 0.61 +0.1 4,259,367 - Shewana3_3551 0.83 -0.1 4,259,369 + Shewana3_3551 0.83 +0.9 4,259,381 + Shewana3_3551 0.85 -3.0 4,259,389 - Shewana3_3551 0.87 -1.1 4,259,413 + +0.0 4,259,413 - +0.4 4,259,414 - +0.9 4,259,414 - -0.6 4,259,469 - -1.3 4,259,492 + +0.0 4,259,549 + +0.1 4,259,654 + -1.0 4,259,654 + -1.1 4,259,662 - +0.3 4,259,965 - Shewana3_3552 0.81 +0.7 4,259,970 - Shewana3_3552 0.82 +0.7 4,259,970 - Shewana3_3552 0.82 +1.4 4,260,002 - +0.3 4,260,009 + -0.8 4,260,009 + -0.3 4,260,009 + +1.4 4,260,018 - +0.8 4,260,111 + +0.2 4,260,291 - +1.3 4,260,307 - +1.8 4,260,388 + Shewana3_3553 0.16 -1.2 4,260,398 - Shewana3_3553 0.17 +0.9
Or see this region's nucleotide sequence