Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3531 and Shewana3_3532 are separated by 10 nucleotides Shewana3_3532 and Shewana3_3533 are separated by 309 nucleotides Shewana3_3533 and Shewana3_3534 are separated by 36 nucleotides
Shewana3_3531: Shewana3_3531 - Rh family protein/ammonium transporter (RefSeq), at 4,231,191 to 4,232,441
_3531
Shewana3_3532: Shewana3_3532 - nitrogen regulatory protein P-II (RefSeq), at 4,232,452 to 4,232,790
_3532
Shewana3_3533: Shewana3_3533 - isochorismatase hydrolase (RefSeq), at 4,233,100 to 4,233,642
_3533
Shewana3_3534: Shewana3_3534 - hypothetical protein (RefSeq), at 4,233,679 to 4,234,413
_3534
Position (kb)
4232
4233 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4231.482 kb on + strand, within Shewana3_3531 at 4231.714 kb on + strand, within Shewana3_3531 at 4231.714 kb on + strand, within Shewana3_3531 at 4231.740 kb on + strand, within Shewana3_3531 at 4231.793 kb on + strand, within Shewana3_3531 at 4231.831 kb on + strand, within Shewana3_3531 at 4231.863 kb on - strand, within Shewana3_3531 at 4231.909 kb on + strand, within Shewana3_3531 at 4232.307 kb on + strand, within Shewana3_3531 at 4232.307 kb on + strand, within Shewana3_3531 at 4232.315 kb on - strand, within Shewana3_3531 at 4232.315 kb on - strand, within Shewana3_3531 at 4232.317 kb on + strand at 4232.325 kb on - strand at 4232.325 kb on - strand at 4232.402 kb on + strand at 4232.411 kb on - strand at 4232.450 kb on + strand at 4232.507 kb on - strand, within Shewana3_3532 at 4232.694 kb on - strand, within Shewana3_3532 at 4232.783 kb on + strand at 4232.936 kb on + strand at 4232.942 kb on - strand at 4233.187 kb on - strand, within Shewana3_3533 at 4233.212 kb on - strand, within Shewana3_3533 at 4233.237 kb on + strand, within Shewana3_3533 at 4233.242 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.285 kb on + strand, within Shewana3_3533 at 4233.438 kb on - strand, within Shewana3_3533 at 4233.586 kb on - strand, within Shewana3_3533
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,231,482 + Shewana3_3531 0.23 -0.0 4,231,714 + Shewana3_3531 0.42 -1.7 4,231,714 + Shewana3_3531 0.42 +0.5 4,231,740 + Shewana3_3531 0.44 -0.3 4,231,793 + Shewana3_3531 0.48 -2.1 4,231,831 + Shewana3_3531 0.51 -0.5 4,231,863 - Shewana3_3531 0.54 -0.0 4,231,909 + Shewana3_3531 0.57 -1.0 4,232,307 + Shewana3_3531 0.89 -1.4 4,232,307 + Shewana3_3531 0.89 +0.4 4,232,315 - Shewana3_3531 0.90 -0.4 4,232,315 - Shewana3_3531 0.90 +0.0 4,232,317 + -0.0 4,232,325 - -0.1 4,232,325 - -0.9 4,232,402 + -1.2 4,232,411 - +0.7 4,232,450 + +0.4 4,232,507 - Shewana3_3532 0.16 +0.2 4,232,694 - Shewana3_3532 0.71 +1.4 4,232,783 + -1.4 4,232,936 + -0.5 4,232,942 - -2.1 4,233,187 - Shewana3_3533 0.16 -1.4 4,233,212 - Shewana3_3533 0.21 -0.1 4,233,237 + Shewana3_3533 0.25 +0.4 4,233,242 + Shewana3_3533 0.26 -0.9 4,233,285 + Shewana3_3533 0.34 +0.4 4,233,285 + Shewana3_3533 0.34 +2.2 4,233,438 - Shewana3_3533 0.62 +0.3 4,233,586 - Shewana3_3533 0.90 -0.6
Or see this region's nucleotide sequence