Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3469 and Shewana3_3470 are separated by 200 nucleotides Shewana3_3470 and Shewana3_3471 are separated by 60 nucleotides
Shewana3_3469: Shewana3_3469 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (RefSeq), at 4,159,363 to 4,161,633
_3469
Shewana3_3470: Shewana3_3470 - LysR family transcriptional regulator (RefSeq), at 4,161,834 to 4,162,739
_3470
Shewana3_3471: Shewana3_3471 - putative signal transduction protein (RefSeq), at 4,162,800 to 4,163,528
_3471
Position (kb)
4161
4162
4163 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4161.024 kb on + strand, within Shewana3_3469 at 4161.040 kb on - strand, within Shewana3_3469 at 4161.133 kb on - strand, within Shewana3_3469 at 4161.175 kb on - strand, within Shewana3_3469 at 4161.245 kb on - strand, within Shewana3_3469 at 4161.263 kb on - strand, within Shewana3_3469 at 4161.337 kb on + strand, within Shewana3_3469 at 4161.622 kb on + strand at 4161.859 kb on + strand at 4162.026 kb on + strand, within Shewana3_3470 at 4162.026 kb on - strand, within Shewana3_3470 at 4162.120 kb on - strand, within Shewana3_3470 at 4162.150 kb on + strand, within Shewana3_3470 at 4162.150 kb on + strand, within Shewana3_3470 at 4162.266 kb on + strand, within Shewana3_3470 at 4162.273 kb on + strand, within Shewana3_3470 at 4162.281 kb on - strand, within Shewana3_3470 at 4162.375 kb on + strand, within Shewana3_3470 at 4162.531 kb on + strand, within Shewana3_3470 at 4162.541 kb on - strand, within Shewana3_3470 at 4162.621 kb on + strand, within Shewana3_3470 at 4162.665 kb on + strand at 4162.710 kb on + strand at 4162.710 kb on + strand at 4162.718 kb on - strand at 4162.894 kb on - strand, within Shewana3_3471 at 4163.068 kb on + strand, within Shewana3_3471 at 4163.093 kb on - strand, within Shewana3_3471 at 4163.116 kb on - strand, within Shewana3_3471 at 4163.133 kb on + strand, within Shewana3_3471 at 4163.320 kb on + strand, within Shewana3_3471 at 4163.535 kb on + strand at 4163.580 kb on + strand at 4163.645 kb on - strand at 4163.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,161,024 + Shewana3_3469 0.73 -2.8 4,161,040 - Shewana3_3469 0.74 +1.4 4,161,133 - Shewana3_3469 0.78 +1.2 4,161,175 - Shewana3_3469 0.80 -0.4 4,161,245 - Shewana3_3469 0.83 +1.6 4,161,263 - Shewana3_3469 0.84 -0.8 4,161,337 + Shewana3_3469 0.87 -2.3 4,161,622 + -1.3 4,161,859 + -0.5 4,162,026 + Shewana3_3470 0.21 -0.8 4,162,026 - Shewana3_3470 0.21 -0.6 4,162,120 - Shewana3_3470 0.32 -0.6 4,162,150 + Shewana3_3470 0.35 +1.1 4,162,150 + Shewana3_3470 0.35 +0.3 4,162,266 + Shewana3_3470 0.48 +0.5 4,162,273 + Shewana3_3470 0.48 +2.3 4,162,281 - Shewana3_3470 0.49 +0.7 4,162,375 + Shewana3_3470 0.60 +1.0 4,162,531 + Shewana3_3470 0.77 +0.5 4,162,541 - Shewana3_3470 0.78 -1.2 4,162,621 + Shewana3_3470 0.87 -0.1 4,162,665 + +0.1 4,162,710 + +0.0 4,162,710 + -0.0 4,162,718 - +0.6 4,162,894 - Shewana3_3471 0.13 -0.1 4,163,068 + Shewana3_3471 0.37 -0.9 4,163,093 - Shewana3_3471 0.40 +0.3 4,163,116 - Shewana3_3471 0.43 -0.1 4,163,133 + Shewana3_3471 0.46 -0.0 4,163,320 + Shewana3_3471 0.71 -1.2 4,163,535 + -0.9 4,163,580 + +0.6 4,163,645 - -0.3 4,163,684 - -1.5
Or see this region's nucleotide sequence