Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3429
Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,104,621 | + | Shewana3_3428 | 0.56 | -0.5 | |
4,104,987 | + | Shewana3_3428 | 0.79 | +0.5 | |
4,105,046 | - | Shewana3_3428 | 0.82 | +0.6 | |
4,105,153 | + | Shewana3_3428 | 0.89 | -1.2 | |
4,105,153 | + | Shewana3_3428 | 0.89 | +0.4 | |
4,105,345 | + | -0.5 | |||
4,105,345 | + | +0.4 | |||
4,105,490 | + | +1.6 | |||
4,105,490 | + | +0.6 | |||
4,105,498 | - | -0.8 | |||
4,105,636 | + | Shewana3_3429 | 0.23 | +0.0 | |
4,105,746 | + | Shewana3_3429 | 0.64 | +1.6 | |
4,105,805 | + | Shewana3_3429 | 0.86 | +0.3 | |
4,105,957 | - | +0.1 | |||
4,106,078 | + | +0.6 | |||
4,106,086 | - | +2.0 | |||
4,106,243 | + | Shewana3_3430 | 0.16 | -0.4 | |
4,106,250 | + | Shewana3_3430 | 0.17 | -2.4 | |
4,106,422 | + | Shewana3_3430 | 0.23 | -0.8 | |
4,106,634 | - | Shewana3_3430 | 0.32 | -1.1 | |
4,106,760 | - | Shewana3_3430 | 0.37 | -0.5 | |
4,106,796 | + | Shewana3_3430 | 0.39 | +1.7 |
Or see this region's nucleotide sequence