Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3400

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3398 and Shewana3_3399 are separated by 9 nucleotidesShewana3_3399 and Shewana3_3400 are separated by 88 nucleotidesShewana3_3400 and Shewana3_3401 are separated by 353 nucleotides Shewana3_3398: Shewana3_3398 - alpha/beta hydrolase fold (RefSeq), at 4,067,477 to 4,068,460 _3398 Shewana3_3399: Shewana3_3399 - hypothetical protein (RefSeq), at 4,068,470 to 4,068,715 _3399 Shewana3_3400: Shewana3_3400 - phosphoribulokinase/uridine kinase (RefSeq), at 4,068,804 to 4,069,691 _3400 Shewana3_3401: Shewana3_3401 - GCN5-related N-acetyltransferase (RefSeq), at 4,070,045 to 4,070,557 _3401 Position (kb) 4068 4069 4070Strain fitness (log2 ratio) -1 0 1 2at 4067.825 kb on - strand, within Shewana3_3398at 4067.872 kb on - strand, within Shewana3_3398at 4067.900 kb on + strand, within Shewana3_3398at 4067.900 kb on + strand, within Shewana3_3398at 4067.939 kb on - strand, within Shewana3_3398at 4067.959 kb on + strand, within Shewana3_3398at 4068.223 kb on - strand, within Shewana3_3398at 4068.223 kb on - strand, within Shewana3_3398at 4068.237 kb on + strand, within Shewana3_3398at 4068.363 kb on + strandat 4068.410 kb on - strandat 4068.463 kb on - strandat 4068.573 kb on + strand, within Shewana3_3399at 4069.079 kb on - strand, within Shewana3_3400at 4069.079 kb on - strand, within Shewana3_3400at 4069.194 kb on + strand, within Shewana3_3400at 4069.202 kb on - strand, within Shewana3_3400at 4069.218 kb on + strand, within Shewana3_3400at 4069.320 kb on + strand, within Shewana3_3400at 4069.328 kb on - strand, within Shewana3_3400at 4069.328 kb on - strand, within Shewana3_3400at 4069.387 kb on - strand, within Shewana3_3400at 4069.450 kb on + strand, within Shewana3_3400at 4069.558 kb on + strand, within Shewana3_3400at 4069.558 kb on + strand, within Shewana3_3400at 4069.579 kb on + strand, within Shewana3_3400at 4069.612 kb on + strandat 4069.675 kb on - strandat 4069.844 kb on + strandat 4069.868 kb on - strandat 4070.093 kb on + strandat 4070.141 kb on + strand, within Shewana3_3401at 4070.143 kb on - strand, within Shewana3_3401at 4070.339 kb on + strand, within Shewana3_3401at 4070.383 kb on - strand, within Shewana3_3401

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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4,067,825 - Shewana3_3398 0.35 -1.1
4,067,872 - Shewana3_3398 0.40 +0.4
4,067,900 + Shewana3_3398 0.43 -0.5
4,067,900 + Shewana3_3398 0.43 -0.0
4,067,939 - Shewana3_3398 0.47 -0.4
4,067,959 + Shewana3_3398 0.49 +0.1
4,068,223 - Shewana3_3398 0.76 +1.4
4,068,223 - Shewana3_3398 0.76 +0.2
4,068,237 + Shewana3_3398 0.77 -0.1
4,068,363 + -0.1
4,068,410 - -0.7
4,068,463 - -0.6
4,068,573 + Shewana3_3399 0.42 -0.5
4,069,079 - Shewana3_3400 0.31 +0.2
4,069,079 - Shewana3_3400 0.31 -0.2
4,069,194 + Shewana3_3400 0.44 +0.6
4,069,202 - Shewana3_3400 0.45 +2.2
4,069,218 + Shewana3_3400 0.47 -0.6
4,069,320 + Shewana3_3400 0.58 -0.4
4,069,328 - Shewana3_3400 0.59 +1.2
4,069,328 - Shewana3_3400 0.59 -1.5
4,069,387 - Shewana3_3400 0.66 -0.6
4,069,450 + Shewana3_3400 0.73 -1.7
4,069,558 + Shewana3_3400 0.85 +0.2
4,069,558 + Shewana3_3400 0.85 +1.0
4,069,579 + Shewana3_3400 0.87 +0.1
4,069,612 + -0.9
4,069,675 - +0.1
4,069,844 + -1.3
4,069,868 - -1.2
4,070,093 + -1.4
4,070,141 + Shewana3_3401 0.19 -1.3
4,070,143 - Shewana3_3401 0.19 -1.0
4,070,339 + Shewana3_3401 0.57 -0.0
4,070,383 - Shewana3_3401 0.66 -1.5

Or see this region's nucleotide sequence