Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3398 and Shewana3_3399 are separated by 9 nucleotides Shewana3_3399 and Shewana3_3400 are separated by 88 nucleotides Shewana3_3400 and Shewana3_3401 are separated by 353 nucleotides
Shewana3_3398: Shewana3_3398 - alpha/beta hydrolase fold (RefSeq), at 4,067,477 to 4,068,460
_3398
Shewana3_3399: Shewana3_3399 - hypothetical protein (RefSeq), at 4,068,470 to 4,068,715
_3399
Shewana3_3400: Shewana3_3400 - phosphoribulokinase/uridine kinase (RefSeq), at 4,068,804 to 4,069,691
_3400
Shewana3_3401: Shewana3_3401 - GCN5-related N-acetyltransferase (RefSeq), at 4,070,045 to 4,070,557
_3401
Position (kb)
4068
4069
4070 Strain fitness (log2 ratio)
-1
0
1
2 at 4067.825 kb on - strand, within Shewana3_3398 at 4067.872 kb on - strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.900 kb on + strand, within Shewana3_3398 at 4067.939 kb on - strand, within Shewana3_3398 at 4067.959 kb on + strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.223 kb on - strand, within Shewana3_3398 at 4068.237 kb on + strand, within Shewana3_3398 at 4068.363 kb on + strand at 4068.410 kb on - strand at 4068.463 kb on - strand at 4068.573 kb on + strand, within Shewana3_3399 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.079 kb on - strand, within Shewana3_3400 at 4069.194 kb on + strand, within Shewana3_3400 at 4069.202 kb on - strand, within Shewana3_3400 at 4069.218 kb on + strand, within Shewana3_3400 at 4069.320 kb on + strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.328 kb on - strand, within Shewana3_3400 at 4069.387 kb on - strand, within Shewana3_3400 at 4069.450 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.558 kb on + strand, within Shewana3_3400 at 4069.579 kb on + strand, within Shewana3_3400 at 4069.612 kb on + strand at 4069.675 kb on - strand at 4069.844 kb on + strand at 4069.868 kb on - strand at 4070.093 kb on + strand at 4070.141 kb on + strand, within Shewana3_3401 at 4070.143 kb on - strand, within Shewana3_3401 at 4070.339 kb on + strand, within Shewana3_3401 at 4070.383 kb on - strand, within Shewana3_3401
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 4,067,825 - Shewana3_3398 0.35 -1.1 4,067,872 - Shewana3_3398 0.40 +0.4 4,067,900 + Shewana3_3398 0.43 -0.5 4,067,900 + Shewana3_3398 0.43 -0.0 4,067,939 - Shewana3_3398 0.47 -0.4 4,067,959 + Shewana3_3398 0.49 +0.1 4,068,223 - Shewana3_3398 0.76 +1.4 4,068,223 - Shewana3_3398 0.76 +0.2 4,068,237 + Shewana3_3398 0.77 -0.1 4,068,363 + -0.1 4,068,410 - -0.7 4,068,463 - -0.6 4,068,573 + Shewana3_3399 0.42 -0.5 4,069,079 - Shewana3_3400 0.31 +0.2 4,069,079 - Shewana3_3400 0.31 -0.2 4,069,194 + Shewana3_3400 0.44 +0.6 4,069,202 - Shewana3_3400 0.45 +2.2 4,069,218 + Shewana3_3400 0.47 -0.6 4,069,320 + Shewana3_3400 0.58 -0.4 4,069,328 - Shewana3_3400 0.59 +1.2 4,069,328 - Shewana3_3400 0.59 -1.5 4,069,387 - Shewana3_3400 0.66 -0.6 4,069,450 + Shewana3_3400 0.73 -1.7 4,069,558 + Shewana3_3400 0.85 +0.2 4,069,558 + Shewana3_3400 0.85 +1.0 4,069,579 + Shewana3_3400 0.87 +0.1 4,069,612 + -0.9 4,069,675 - +0.1 4,069,844 + -1.3 4,069,868 - -1.2 4,070,093 + -1.4 4,070,141 + Shewana3_3401 0.19 -1.3 4,070,143 - Shewana3_3401 0.19 -1.0 4,070,339 + Shewana3_3401 0.57 -0.0 4,070,383 - Shewana3_3401 0.66 -1.5
Or see this region's nucleotide sequence