Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3300 and Shewana3_3301 are separated by 163 nucleotides Shewana3_3301 and Shewana3_3302 are separated by 26 nucleotides Shewana3_3302 and Shewana3_3303 are separated by 104 nucleotides
Shewana3_3300: Shewana3_3300 - chromate transporter (RefSeq), at 3,954,186 to 3,955,358
_3300
Shewana3_3301: Shewana3_3301 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,955,522 to 3,960,531
_3301
Shewana3_3302: Shewana3_3302 - ISPsy11, transposase OrfA (RefSeq), at 3,960,558 to 3,960,950
_3302
Shewana3_3303: Shewana3_3303 - integrase catalytic subunit (RefSeq), at 3,961,055 to 3,961,774
_3303
Position (kb)
3955
3956
3957
3958
3959
3960
3961 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3954.543 kb on + strand, within Shewana3_3300 at 3954.559 kb on + strand, within Shewana3_3300 at 3954.625 kb on + strand, within Shewana3_3300 at 3954.625 kb on + strand, within Shewana3_3300 at 3954.628 kb on - strand, within Shewana3_3300 at 3954.858 kb on - strand, within Shewana3_3300 at 3954.858 kb on - strand, within Shewana3_3300 at 3954.858 kb on - strand, within Shewana3_3300 at 3954.858 kb on - strand, within Shewana3_3300 at 3954.998 kb on + strand, within Shewana3_3300 at 3955.006 kb on - strand, within Shewana3_3300 at 3955.006 kb on - strand, within Shewana3_3300 at 3955.012 kb on + strand, within Shewana3_3300 at 3955.071 kb on + strand, within Shewana3_3300 at 3955.161 kb on - strand, within Shewana3_3300 at 3955.354 kb on + strand at 3955.637 kb on - strand at 3955.682 kb on - strand at 3955.682 kb on - strand at 3955.811 kb on - strand at 3955.816 kb on - strand at 3955.821 kb on - strand at 3955.834 kb on + strand at 3955.873 kb on + strand at 3955.880 kb on - strand at 3955.881 kb on - strand at 3955.881 kb on - strand at 3955.982 kb on + strand at 3955.982 kb on + strand at 3956.017 kb on - strand at 3956.028 kb on + strand, within Shewana3_3301 at 3956.046 kb on - strand, within Shewana3_3301 at 3956.078 kb on + strand, within Shewana3_3301 at 3956.081 kb on - strand, within Shewana3_3301 at 3956.081 kb on - strand, within Shewana3_3301 at 3956.125 kb on - strand, within Shewana3_3301 at 3956.141 kb on + strand, within Shewana3_3301 at 3956.150 kb on - strand, within Shewana3_3301 at 3956.153 kb on + strand, within Shewana3_3301 at 3956.313 kb on + strand, within Shewana3_3301 at 3956.404 kb on - strand, within Shewana3_3301 at 3956.457 kb on + strand, within Shewana3_3301 at 3956.532 kb on - strand, within Shewana3_3301 at 3957.022 kb on + strand, within Shewana3_3301 at 3957.022 kb on + strand, within Shewana3_3301 at 3957.030 kb on - strand, within Shewana3_3301 at 3957.030 kb on - strand, within Shewana3_3301 at 3957.030 kb on - strand, within Shewana3_3301 at 3957.033 kb on - strand, within Shewana3_3301 at 3957.033 kb on - strand, within Shewana3_3301 at 3957.045 kb on + strand, within Shewana3_3301 at 3957.045 kb on + strand, within Shewana3_3301 at 3957.053 kb on - strand, within Shewana3_3301 at 3957.088 kb on + strand, within Shewana3_3301 at 3957.285 kb on + strand, within Shewana3_3301 at 3957.572 kb on + strand, within Shewana3_3301 at 3957.572 kb on + strand, within Shewana3_3301 at 3957.848 kb on + strand, within Shewana3_3301 at 3957.972 kb on + strand, within Shewana3_3301 at 3958.041 kb on + strand, within Shewana3_3301 at 3958.190 kb on - strand, within Shewana3_3301 at 3958.313 kb on + strand, within Shewana3_3301 at 3958.431 kb on + strand, within Shewana3_3301 at 3958.715 kb on + strand, within Shewana3_3301 at 3958.747 kb on - strand, within Shewana3_3301 at 3958.776 kb on - strand, within Shewana3_3301 at 3958.789 kb on + strand, within Shewana3_3301 at 3958.819 kb on + strand, within Shewana3_3301 at 3958.824 kb on + strand, within Shewana3_3301 at 3958.880 kb on + strand, within Shewana3_3301 at 3958.880 kb on + strand, within Shewana3_3301 at 3958.880 kb on + strand, within Shewana3_3301 at 3958.880 kb on + strand, within Shewana3_3301 at 3958.919 kb on + strand, within Shewana3_3301 at 3958.960 kb on - strand, within Shewana3_3301 at 3959.275 kb on + strand, within Shewana3_3301 at 3959.331 kb on - strand, within Shewana3_3301 at 3959.331 kb on - strand, within Shewana3_3301 at 3959.448 kb on + strand, within Shewana3_3301 at 3959.448 kb on + strand, within Shewana3_3301 at 3959.514 kb on - strand, within Shewana3_3301 at 3959.546 kb on + strand, within Shewana3_3301 at 3959.632 kb on + strand, within Shewana3_3301 at 3959.773 kb on + strand, within Shewana3_3301 at 3959.877 kb on - strand, within Shewana3_3301 at 3959.966 kb on + strand, within Shewana3_3301 at 3959.973 kb on - strand, within Shewana3_3301 at 3960.032 kb on - strand at 3960.032 kb on - strand at 3960.093 kb on + strand at 3960.113 kb on + strand at 3960.190 kb on - strand at 3960.291 kb on + strand at 3960.328 kb on - strand at 3960.343 kb on - strand at 3960.343 kb on - strand at 3960.374 kb on + strand at 3960.382 kb on - strand at 3960.452 kb on + strand at 3960.457 kb on + strand at 3960.473 kb on + strand at 3960.481 kb on - strand at 3960.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,954,543 + Shewana3_3300 0.30 -0.9 3,954,559 + Shewana3_3300 0.32 -0.9 3,954,625 + Shewana3_3300 0.37 -1.4 3,954,625 + Shewana3_3300 0.37 -0.4 3,954,628 - Shewana3_3300 0.38 +1.9 3,954,858 - Shewana3_3300 0.57 -0.8 3,954,858 - Shewana3_3300 0.57 -0.5 3,954,858 - Shewana3_3300 0.57 +0.9 3,954,858 - Shewana3_3300 0.57 -0.3 3,954,998 + Shewana3_3300 0.69 -0.6 3,955,006 - Shewana3_3300 0.70 +1.0 3,955,006 - Shewana3_3300 0.70 -1.6 3,955,012 + Shewana3_3300 0.70 -1.0 3,955,071 + Shewana3_3300 0.75 +0.4 3,955,161 - Shewana3_3300 0.83 -0.9 3,955,354 + +0.1 3,955,637 - +1.9 3,955,682 - +0.5 3,955,682 - -0.6 3,955,811 - -0.4 3,955,816 - +0.7 3,955,821 - -0.6 3,955,834 + +1.8 3,955,873 + +1.3 3,955,880 - -0.3 3,955,881 - +2.2 3,955,881 - +0.4 3,955,982 + -1.9 3,955,982 + -1.6 3,956,017 - +0.0 3,956,028 + Shewana3_3301 0.10 -0.5 3,956,046 - Shewana3_3301 0.10 -0.0 3,956,078 + Shewana3_3301 0.11 -0.0 3,956,081 - Shewana3_3301 0.11 -0.3 3,956,081 - Shewana3_3301 0.11 +0.8 3,956,125 - Shewana3_3301 0.12 +1.0 3,956,141 + Shewana3_3301 0.12 -1.6 3,956,150 - Shewana3_3301 0.13 -0.6 3,956,153 + Shewana3_3301 0.13 +0.3 3,956,313 + Shewana3_3301 0.16 +0.3 3,956,404 - Shewana3_3301 0.18 +0.9 3,956,457 + Shewana3_3301 0.19 -1.9 3,956,532 - Shewana3_3301 0.20 +0.8 3,957,022 + Shewana3_3301 0.30 -0.2 3,957,022 + Shewana3_3301 0.30 +0.2 3,957,030 - Shewana3_3301 0.30 -0.1 3,957,030 - Shewana3_3301 0.30 +0.3 3,957,030 - Shewana3_3301 0.30 +1.1 3,957,033 - Shewana3_3301 0.30 +0.1 3,957,033 - Shewana3_3301 0.30 -0.2 3,957,045 + Shewana3_3301 0.30 -2.1 3,957,045 + Shewana3_3301 0.30 +2.0 3,957,053 - Shewana3_3301 0.31 +0.4 3,957,088 + Shewana3_3301 0.31 -0.3 3,957,285 + Shewana3_3301 0.35 -2.6 3,957,572 + Shewana3_3301 0.41 -0.6 3,957,572 + Shewana3_3301 0.41 -0.8 3,957,848 + Shewana3_3301 0.46 -1.4 3,957,972 + Shewana3_3301 0.49 -1.8 3,958,041 + Shewana3_3301 0.50 +0.7 3,958,190 - Shewana3_3301 0.53 -1.8 3,958,313 + Shewana3_3301 0.56 +0.4 3,958,431 + Shewana3_3301 0.58 -3.0 3,958,715 + Shewana3_3301 0.64 -0.2 3,958,747 - Shewana3_3301 0.64 -2.8 3,958,776 - Shewana3_3301 0.65 -0.1 3,958,789 + Shewana3_3301 0.65 -1.0 3,958,819 + Shewana3_3301 0.66 -1.0 3,958,824 + Shewana3_3301 0.66 +0.8 3,958,880 + Shewana3_3301 0.67 +0.2 3,958,880 + Shewana3_3301 0.67 -2.0 3,958,880 + Shewana3_3301 0.67 -0.9 3,958,880 + Shewana3_3301 0.67 -0.7 3,958,919 + Shewana3_3301 0.68 -0.3 3,958,960 - Shewana3_3301 0.69 +0.6 3,959,275 + Shewana3_3301 0.75 -2.2 3,959,331 - Shewana3_3301 0.76 -2.5 3,959,331 - Shewana3_3301 0.76 -1.4 3,959,448 + Shewana3_3301 0.78 -0.4 3,959,448 + Shewana3_3301 0.78 -0.1 3,959,514 - Shewana3_3301 0.80 +0.0 3,959,546 + Shewana3_3301 0.80 -2.1 3,959,632 + Shewana3_3301 0.82 -0.3 3,959,773 + Shewana3_3301 0.85 -0.6 3,959,877 - Shewana3_3301 0.87 -0.3 3,959,966 + Shewana3_3301 0.89 -1.4 3,959,973 - Shewana3_3301 0.89 -1.7 3,960,032 - +0.2 3,960,032 - +0.2 3,960,093 + +0.7 3,960,113 + -0.0 3,960,190 - -2.6 3,960,291 + -0.0 3,960,328 - -0.8 3,960,343 - -0.5 3,960,343 - -1.8 3,960,374 + +0.9 3,960,382 - -0.4 3,960,452 + -1.5 3,960,457 + +0.6 3,960,473 + -1.9 3,960,481 - +0.8 3,960,510 - -0.8
Or see this region's nucleotide sequence