Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3244 and Shewana3_3245 overlap by 4 nucleotides Shewana3_3245 and Shewana3_3246 are separated by 198 nucleotides Shewana3_3246 and Shewana3_3247 are separated by 124 nucleotides
Shewana3_3244: Shewana3_3244 - FAD dependent oxidoreductase (RefSeq), at 3,887,552 to 3,889,027
_3244
Shewana3_3245: Shewana3_3245 - hypothetical protein (RefSeq), at 3,889,024 to 3,889,359
_3245
Shewana3_3246: Shewana3_3246 - hypothetical protein (RefSeq), at 3,889,558 to 3,890,109
_3246
Shewana3_3247: Shewana3_3247 - extracellular solute-binding protein (RefSeq), at 3,890,234 to 3,891,091
_3247
Position (kb)
3889
3890 Strain fitness (log2 ratio)
-2
-1
0
1 at 3888.132 kb on + strand, within Shewana3_3244 at 3888.296 kb on + strand, within Shewana3_3244 at 3888.304 kb on - strand, within Shewana3_3244 at 3888.347 kb on + strand, within Shewana3_3244 at 3888.415 kb on + strand, within Shewana3_3244 at 3888.462 kb on + strand, within Shewana3_3244 at 3888.510 kb on + strand, within Shewana3_3244 at 3888.531 kb on + strand, within Shewana3_3244 at 3888.627 kb on - strand, within Shewana3_3244 at 3888.639 kb on + strand, within Shewana3_3244 at 3888.675 kb on + strand, within Shewana3_3244 at 3888.690 kb on - strand, within Shewana3_3244 at 3888.763 kb on + strand, within Shewana3_3244 at 3888.776 kb on - strand, within Shewana3_3244 at 3888.835 kb on - strand, within Shewana3_3244 at 3888.915 kb on - strand at 3888.953 kb on - strand at 3888.955 kb on + strand at 3889.060 kb on - strand, within Shewana3_3245 at 3889.110 kb on - strand, within Shewana3_3245 at 3889.110 kb on - strand, within Shewana3_3245 at 3889.251 kb on + strand, within Shewana3_3245 at 3889.310 kb on + strand, within Shewana3_3245 at 3889.346 kb on + strand at 3889.466 kb on - strand at 3889.828 kb on - strand, within Shewana3_3246 at 3890.191 kb on + strand at 3890.229 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,888,132 + Shewana3_3244 0.39 -0.2 3,888,296 + Shewana3_3244 0.50 -1.6 3,888,304 - Shewana3_3244 0.51 -0.2 3,888,347 + Shewana3_3244 0.54 -2.1 3,888,415 + Shewana3_3244 0.58 -0.8 3,888,462 + Shewana3_3244 0.62 -1.5 3,888,510 + Shewana3_3244 0.65 +0.4 3,888,531 + Shewana3_3244 0.66 -1.8 3,888,627 - Shewana3_3244 0.73 -0.5 3,888,639 + Shewana3_3244 0.74 -0.7 3,888,675 + Shewana3_3244 0.76 -1.5 3,888,690 - Shewana3_3244 0.77 +0.9 3,888,763 + Shewana3_3244 0.82 +0.0 3,888,776 - Shewana3_3244 0.83 -0.1 3,888,835 - Shewana3_3244 0.87 -0.4 3,888,915 - +0.2 3,888,953 - -0.5 3,888,955 + -0.6 3,889,060 - Shewana3_3245 0.11 -1.3 3,889,110 - Shewana3_3245 0.26 +1.4 3,889,110 - Shewana3_3245 0.26 +1.7 3,889,251 + Shewana3_3245 0.68 +1.3 3,889,310 + Shewana3_3245 0.85 +0.4 3,889,346 + -0.8 3,889,466 - -0.6 3,889,828 - Shewana3_3246 0.49 +0.2 3,890,191 + +0.4 3,890,229 - -1.1
Or see this region's nucleotide sequence