Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3193 and Shewana3_3194 are separated by 1 nucleotides Shewana3_3194 and Shewana3_3195 are separated by 500 nucleotides
Shewana3_3193: Shewana3_3193 - secretion protein HlyD family protein (RefSeq), at 3,831,240 to 3,832,385
_3193
Shewana3_3194: Shewana3_3194 - hypothetical protein (RefSeq), at 3,832,387 to 3,832,803
_3194
Shewana3_3195: Shewana3_3195 - hypothetical protein (RefSeq), at 3,833,304 to 3,833,759
_3195
Position (kb)
3832
3833 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3831.459 kb on - strand, within Shewana3_3193 at 3831.550 kb on - strand, within Shewana3_3193 at 3831.654 kb on - strand, within Shewana3_3193 at 3831.738 kb on - strand, within Shewana3_3193 at 3831.764 kb on - strand, within Shewana3_3193 at 3831.834 kb on - strand, within Shewana3_3193 at 3831.849 kb on - strand, within Shewana3_3193 at 3831.990 kb on + strand, within Shewana3_3193 at 3832.092 kb on - strand, within Shewana3_3193 at 3832.094 kb on + strand, within Shewana3_3193 at 3832.301 kb on - strand at 3832.512 kb on - strand, within Shewana3_3194 at 3832.677 kb on - strand, within Shewana3_3194 at 3832.897 kb on + strand at 3832.915 kb on - strand at 3833.091 kb on + strand at 3833.092 kb on + strand at 3833.122 kb on + strand at 3833.130 kb on - strand at 3833.257 kb on + strand at 3833.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,831,459 - Shewana3_3193 0.19 +1.4 3,831,550 - Shewana3_3193 0.27 -1.1 3,831,654 - Shewana3_3193 0.36 +3.1 3,831,738 - Shewana3_3193 0.43 -0.0 3,831,764 - Shewana3_3193 0.46 +1.4 3,831,834 - Shewana3_3193 0.52 -0.1 3,831,849 - Shewana3_3193 0.53 +0.3 3,831,990 + Shewana3_3193 0.65 -0.1 3,832,092 - Shewana3_3193 0.74 -0.4 3,832,094 + Shewana3_3193 0.75 -3.7 3,832,301 - -0.2 3,832,512 - Shewana3_3194 0.30 +1.4 3,832,677 - Shewana3_3194 0.70 -0.1 3,832,897 + -0.6 3,832,915 - -0.9 3,833,091 + -1.5 3,833,092 + +1.6 3,833,122 + +1.1 3,833,130 - -0.6 3,833,257 + +0.7 3,833,257 + +0.0
Or see this region's nucleotide sequence