Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3160 and Shewana3_3161 are separated by 183 nucleotides Shewana3_3161 and Shewana3_3162 are separated by 141 nucleotides Shewana3_3162 and Shewana3_3163 are separated by 287 nucleotides
Shewana3_3160: Shewana3_3160 - glutamate-cysteine ligase (RefSeq), at 3,788,913 to 3,790,562
_3160
Shewana3_3161: Shewana3_3161 - peptidase M16 domain-containing protein (RefSeq), at 3,790,746 to 3,793,595
_3161
Shewana3_3162: Shewana3_3162 - hypothetical protein (RefSeq), at 3,793,737 to 3,794,162
_3162
Shewana3_3163: Shewana3_3163 - sodium:dicarboxylate symporter (RefSeq), at 3,794,450 to 3,795,703
_3163
Position (kb)
3790
3791
3792
3793
3794 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3790.653 kb on - strand at 3790.773 kb on + strand at 3790.781 kb on - strand at 3790.781 kb on - strand at 3790.863 kb on - strand at 3790.931 kb on + strand at 3790.957 kb on + strand at 3790.994 kb on - strand at 3791.182 kb on - strand, within Shewana3_3161 at 3791.190 kb on - strand, within Shewana3_3161 at 3791.460 kb on - strand, within Shewana3_3161 at 3791.499 kb on + strand, within Shewana3_3161 at 3791.509 kb on + strand, within Shewana3_3161 at 3791.530 kb on + strand, within Shewana3_3161 at 3791.604 kb on - strand, within Shewana3_3161 at 3791.642 kb on - strand, within Shewana3_3161 at 3791.648 kb on + strand, within Shewana3_3161 at 3791.685 kb on - strand, within Shewana3_3161 at 3791.765 kb on - strand, within Shewana3_3161 at 3791.850 kb on + strand, within Shewana3_3161 at 3791.860 kb on - strand, within Shewana3_3161 at 3791.927 kb on + strand, within Shewana3_3161 at 3792.112 kb on - strand, within Shewana3_3161 at 3792.214 kb on - strand, within Shewana3_3161 at 3792.308 kb on - strand, within Shewana3_3161 at 3792.308 kb on - strand, within Shewana3_3161 at 3792.388 kb on - strand, within Shewana3_3161 at 3792.449 kb on + strand, within Shewana3_3161 at 3792.576 kb on + strand, within Shewana3_3161 at 3792.692 kb on - strand, within Shewana3_3161 at 3792.837 kb on + strand, within Shewana3_3161 at 3792.950 kb on + strand, within Shewana3_3161 at 3793.095 kb on - strand, within Shewana3_3161 at 3793.255 kb on - strand, within Shewana3_3161 at 3793.496 kb on - strand at 3793.670 kb on + strand at 3793.678 kb on - strand at 3793.692 kb on + strand at 3794.009 kb on + strand, within Shewana3_3162 at 3794.017 kb on - strand, within Shewana3_3162 at 3794.025 kb on - strand, within Shewana3_3162 at 3794.076 kb on - strand, within Shewana3_3162 at 3794.108 kb on - strand, within Shewana3_3162 at 3794.296 kb on + strand at 3794.343 kb on + strand at 3794.390 kb on - strand at 3794.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,790,653 - -1.2 3,790,773 + +1.0 3,790,781 - -0.1 3,790,781 - +0.5 3,790,863 - -0.1 3,790,931 + -2.3 3,790,957 + -1.0 3,790,994 - +1.6 3,791,182 - Shewana3_3161 0.15 -0.0 3,791,190 - Shewana3_3161 0.16 +3.9 3,791,460 - Shewana3_3161 0.25 -0.2 3,791,499 + Shewana3_3161 0.26 -1.7 3,791,509 + Shewana3_3161 0.27 -1.0 3,791,530 + Shewana3_3161 0.28 +1.5 3,791,604 - Shewana3_3161 0.30 +0.4 3,791,642 - Shewana3_3161 0.31 +2.0 3,791,648 + Shewana3_3161 0.32 -1.1 3,791,685 - Shewana3_3161 0.33 +0.5 3,791,765 - Shewana3_3161 0.36 -0.6 3,791,850 + Shewana3_3161 0.39 -1.8 3,791,860 - Shewana3_3161 0.39 -1.3 3,791,927 + Shewana3_3161 0.41 +2.8 3,792,112 - Shewana3_3161 0.48 +0.1 3,792,214 - Shewana3_3161 0.52 -1.0 3,792,308 - Shewana3_3161 0.55 -0.1 3,792,308 - Shewana3_3161 0.55 +0.3 3,792,388 - Shewana3_3161 0.58 +0.4 3,792,449 + Shewana3_3161 0.60 -0.5 3,792,576 + Shewana3_3161 0.64 -0.2 3,792,692 - Shewana3_3161 0.68 +1.3 3,792,837 + Shewana3_3161 0.73 -2.3 3,792,950 + Shewana3_3161 0.77 -1.5 3,793,095 - Shewana3_3161 0.82 +0.2 3,793,255 - Shewana3_3161 0.88 -1.1 3,793,496 - +0.6 3,793,670 + -2.9 3,793,678 - +0.5 3,793,692 + +1.1 3,794,009 + Shewana3_3162 0.64 -0.9 3,794,017 - Shewana3_3162 0.66 +0.8 3,794,025 - Shewana3_3162 0.68 +0.3 3,794,076 - Shewana3_3162 0.80 -1.0 3,794,108 - Shewana3_3162 0.87 +1.1 3,794,296 + +0.3 3,794,343 + -2.9 3,794,390 - +2.3 3,794,544 + +0.1
Or see this region's nucleotide sequence