Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3159

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3157 and Shewana3_3158 are separated by 50 nucleotidesShewana3_3158 and Shewana3_3159 are separated by 156 nucleotidesShewana3_3159 and Shewana3_3160 overlap by 1 nucleotides Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627 _3157 Shewana3_3158: Shewana3_3158 - hypothetical protein (RefSeq), at 3,787,678 to 3,788,295 _3158 Shewana3_3159: Shewana3_3159 - hypothetical protein (RefSeq), at 3,788,452 to 3,788,913 _3159 Shewana3_3160: Shewana3_3160 - glutamate-cysteine ligase (RefSeq), at 3,788,913 to 3,790,562 _3160 Position (kb) 3788 3789Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3787.655 kb on - strandat 3787.738 kb on - strandat 3787.748 kb on - strand, within Shewana3_3158at 3788.000 kb on + strand, within Shewana3_3158at 3788.008 kb on - strand, within Shewana3_3158at 3788.008 kb on - strand, within Shewana3_3158at 3788.010 kb on + strand, within Shewana3_3158at 3788.018 kb on - strand, within Shewana3_3158at 3788.081 kb on + strand, within Shewana3_3158at 3788.089 kb on - strand, within Shewana3_3158at 3788.342 kb on + strandat 3788.342 kb on + strandat 3788.342 kb on + strandat 3788.350 kb on - strandat 3788.350 kb on - strandat 3788.350 kb on - strandat 3788.350 kb on - strandat 3788.356 kb on - strandat 3788.545 kb on + strand, within Shewana3_3159at 3788.642 kb on - strand, within Shewana3_3159at 3788.743 kb on + strand, within Shewana3_3159at 3788.760 kb on + strand, within Shewana3_3159at 3788.768 kb on - strand, within Shewana3_3159at 3788.802 kb on - strand, within Shewana3_3159at 3788.888 kb on - strandat 3788.888 kb on - strandat 3788.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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3,787,655 - -0.8
3,787,738 - +0.4
3,787,748 - Shewana3_3158 0.11 -1.3
3,788,000 + Shewana3_3158 0.52 -0.6
3,788,008 - Shewana3_3158 0.53 -1.0
3,788,008 - Shewana3_3158 0.53 +0.2
3,788,010 + Shewana3_3158 0.54 +1.0
3,788,018 - Shewana3_3158 0.55 +0.2
3,788,081 + Shewana3_3158 0.65 +1.6
3,788,089 - Shewana3_3158 0.67 +1.4
3,788,342 + -0.8
3,788,342 + +1.6
3,788,342 + +0.5
3,788,350 - -1.7
3,788,350 - -3.5
3,788,350 - -0.3
3,788,350 - -0.5
3,788,356 - -0.5
3,788,545 + Shewana3_3159 0.20 -0.3
3,788,642 - Shewana3_3159 0.41 -3.2
3,788,743 + Shewana3_3159 0.63 +0.5
3,788,760 + Shewana3_3159 0.67 -0.5
3,788,768 - Shewana3_3159 0.68 -1.7
3,788,802 - Shewana3_3159 0.76 -1.7
3,788,888 - -3.7
3,788,888 - -4.2
3,788,897 + -0.3

Or see this region's nucleotide sequence