Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3132

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3131 and Shewana3_3132 are separated by 0 nucleotidesShewana3_3132 and ispH are separated by 215 nucleotides Shewana3_3131: Shewana3_3131 - prepilin-type cleavage/methylation-like protein (RefSeq), at 3,757,020 to 3,758,012 _3131 Shewana3_3132: Shewana3_3132 - type IV pilus modification protein PilV (RefSeq), at 3,758,013 to 3,758,573 _3132 Shewana3_3133: ispH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (RefSeq), at 3,758,789 to 3,759,745 ispH Position (kb) 3758 3759Strain fitness (log2 ratio) -2 -1 0 1at 3757.141 kb on + strand, within Shewana3_3131at 3757.275 kb on - strand, within Shewana3_3131at 3757.346 kb on + strand, within Shewana3_3131at 3757.354 kb on - strand, within Shewana3_3131at 3758.065 kb on + strandat 3758.182 kb on - strand, within Shewana3_3132at 3758.406 kb on + strand, within Shewana3_3132

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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3,757,141 + Shewana3_3131 0.12 -0.5
3,757,275 - Shewana3_3131 0.26 -0.8
3,757,346 + Shewana3_3131 0.33 +1.0
3,757,354 - Shewana3_3131 0.34 -0.2
3,758,065 + -2.0
3,758,182 - Shewana3_3132 0.30 -1.3
3,758,406 + Shewana3_3132 0.70 -0.6

Or see this region's nucleotide sequence