Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3088 and Shewana3_3089 are separated by 419 nucleotides Shewana3_3089 and Shewana3_3090 are separated by 370 nucleotides
Shewana3_3088: Shewana3_3088 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,702,013 to 3,704,133
_3088
Shewana3_3089: Shewana3_3089 - amino acid/peptide transporter (RefSeq), at 3,704,553 to 3,706,103
_3089
Shewana3_3090: Shewana3_3090 - luciferase family protein (RefSeq), at 3,706,474 to 3,707,523
_3090
Position (kb)
3704
3705
3706
3707 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3703.571 kb on - strand, within Shewana3_3088 at 3703.689 kb on + strand, within Shewana3_3088 at 3703.697 kb on - strand, within Shewana3_3088 at 3704.235 kb on - strand at 3704.730 kb on - strand, within Shewana3_3089 at 3704.796 kb on + strand, within Shewana3_3089 at 3704.827 kb on + strand, within Shewana3_3089 at 3705.019 kb on + strand, within Shewana3_3089 at 3705.055 kb on - strand, within Shewana3_3089 at 3705.339 kb on + strand, within Shewana3_3089 at 3705.452 kb on + strand, within Shewana3_3089 at 3705.469 kb on - strand, within Shewana3_3089 at 3705.532 kb on - strand, within Shewana3_3089 at 3705.820 kb on + strand, within Shewana3_3089 at 3705.900 kb on + strand, within Shewana3_3089 at 3705.900 kb on + strand, within Shewana3_3089 at 3706.120 kb on + strand at 3706.253 kb on - strand at 3706.303 kb on + strand at 3706.362 kb on + strand at 3706.367 kb on + strand at 3706.443 kb on + strand at 3706.641 kb on - strand, within Shewana3_3090 at 3706.774 kb on - strand, within Shewana3_3090 at 3706.860 kb on - strand, within Shewana3_3090
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,703,571 - Shewana3_3088 0.73 -1.4 3,703,689 + Shewana3_3088 0.79 +1.4 3,703,697 - Shewana3_3088 0.79 -1.5 3,704,235 - +1.1 3,704,730 - Shewana3_3089 0.11 +0.4 3,704,796 + Shewana3_3089 0.16 -0.9 3,704,827 + Shewana3_3089 0.18 +1.9 3,705,019 + Shewana3_3089 0.30 -0.8 3,705,055 - Shewana3_3089 0.32 +0.5 3,705,339 + Shewana3_3089 0.51 +0.1 3,705,452 + Shewana3_3089 0.58 +0.7 3,705,469 - Shewana3_3089 0.59 -1.5 3,705,532 - Shewana3_3089 0.63 +2.1 3,705,820 + Shewana3_3089 0.82 +0.9 3,705,900 + Shewana3_3089 0.87 +3.1 3,705,900 + Shewana3_3089 0.87 -0.2 3,706,120 + +1.1 3,706,253 - +3.6 3,706,303 + -2.9 3,706,362 + -0.1 3,706,367 + +0.1 3,706,443 + +1.5 3,706,641 - Shewana3_3090 0.16 -0.5 3,706,774 - Shewana3_3090 0.29 -0.3 3,706,860 - Shewana3_3090 0.37 -0.3
Or see this region's nucleotide sequence