Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2991 and Shewana3_2992 are separated by 128 nucleotides Shewana3_2992 and Shewana3_2993 are separated by 118 nucleotides Shewana3_2993 and Shewana3_2994 are separated by 99 nucleotides
Shewana3_2991: Shewana3_2991 - redoxin domain-containing protein (RefSeq), at 3,597,334 to 3,597,981
_2991
Shewana3_2992: Shewana3_2992 - hypothetical protein (RefSeq), at 3,598,110 to 3,598,745
_2992
Shewana3_2993: Shewana3_2993 - amino acid ABC transporter periplasmic protein (RefSeq), at 3,598,864 to 3,599,613
_2993
Shewana3_2994: Shewana3_2994 - hypothetical protein (RefSeq), at 3,599,713 to 3,600,021
_2994
Position (kb)
3598
3599 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3597.179 kb on - strand at 3597.262 kb on - strand at 3597.262 kb on - strand at 3597.337 kb on - strand at 3597.342 kb on - strand at 3597.349 kb on - strand at 3597.353 kb on + strand at 3597.441 kb on + strand, within Shewana3_2991 at 3597.449 kb on - strand, within Shewana3_2991 at 3597.588 kb on + strand, within Shewana3_2991 at 3597.588 kb on + strand, within Shewana3_2991 at 3597.588 kb on + strand, within Shewana3_2991 at 3597.745 kb on - strand, within Shewana3_2991 at 3597.804 kb on - strand, within Shewana3_2991 at 3597.929 kb on - strand at 3597.951 kb on - strand at 3598.401 kb on + strand, within Shewana3_2992 at 3598.403 kb on + strand, within Shewana3_2992 at 3598.590 kb on - strand, within Shewana3_2992 at 3598.628 kb on + strand, within Shewana3_2992 at 3598.674 kb on + strand, within Shewana3_2992 at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3599.014 kb on + strand, within Shewana3_2993 at 3599.015 kb on - strand, within Shewana3_2993 at 3599.216 kb on + strand, within Shewana3_2993 at 3599.279 kb on - strand, within Shewana3_2993 at 3599.488 kb on + strand, within Shewana3_2993 at 3599.550 kb on + strand at 3599.558 kb on - strand at 3599.558 kb on - strand at 3599.707 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,597,179 - -2.2 3,597,262 - +0.0 3,597,262 - +0.1 3,597,337 - -0.7 3,597,342 - +0.5 3,597,349 - +0.3 3,597,353 + -0.9 3,597,441 + Shewana3_2991 0.17 +0.9 3,597,449 - Shewana3_2991 0.18 +2.5 3,597,588 + Shewana3_2991 0.39 -1.4 3,597,588 + Shewana3_2991 0.39 -1.0 3,597,588 + Shewana3_2991 0.39 -0.4 3,597,745 - Shewana3_2991 0.63 -1.2 3,597,804 - Shewana3_2991 0.73 -2.4 3,597,929 - -1.8 3,597,951 - +1.1 3,598,401 + Shewana3_2992 0.46 -2.1 3,598,403 + Shewana3_2992 0.46 +1.1 3,598,590 - Shewana3_2992 0.75 -3.4 3,598,628 + Shewana3_2992 0.81 +0.1 3,598,674 + Shewana3_2992 0.89 -1.5 3,598,682 + +1.1 3,598,682 + -2.0 3,598,682 + -1.7 3,598,682 + -0.1 3,598,682 + +0.4 3,598,682 + +0.5 3,599,014 + Shewana3_2993 0.20 -0.9 3,599,015 - Shewana3_2993 0.20 +0.6 3,599,216 + Shewana3_2993 0.47 -0.1 3,599,279 - Shewana3_2993 0.55 -0.8 3,599,488 + Shewana3_2993 0.83 +0.8 3,599,550 + -2.2 3,599,558 - -0.9 3,599,558 - -0.5 3,599,707 - -0.1
Or see this region's nucleotide sequence