Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2992

Experiment: Fusidic 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2991 and Shewana3_2992 are separated by 128 nucleotidesShewana3_2992 and Shewana3_2993 are separated by 118 nucleotidesShewana3_2993 and Shewana3_2994 are separated by 99 nucleotides Shewana3_2991: Shewana3_2991 - redoxin domain-containing protein (RefSeq), at 3,597,334 to 3,597,981 _2991 Shewana3_2992: Shewana3_2992 - hypothetical protein (RefSeq), at 3,598,110 to 3,598,745 _2992 Shewana3_2993: Shewana3_2993 - amino acid ABC transporter periplasmic protein (RefSeq), at 3,598,864 to 3,599,613 _2993 Shewana3_2994: Shewana3_2994 - hypothetical protein (RefSeq), at 3,599,713 to 3,600,021 _2994 Position (kb) 3598 3599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3597.179 kb on - strandat 3597.262 kb on - strandat 3597.262 kb on - strandat 3597.337 kb on - strandat 3597.342 kb on - strandat 3597.349 kb on - strandat 3597.353 kb on + strandat 3597.441 kb on + strand, within Shewana3_2991at 3597.449 kb on - strand, within Shewana3_2991at 3597.588 kb on + strand, within Shewana3_2991at 3597.588 kb on + strand, within Shewana3_2991at 3597.588 kb on + strand, within Shewana3_2991at 3597.745 kb on - strand, within Shewana3_2991at 3597.804 kb on - strand, within Shewana3_2991at 3597.929 kb on - strandat 3597.951 kb on - strandat 3598.401 kb on + strand, within Shewana3_2992at 3598.403 kb on + strand, within Shewana3_2992at 3598.590 kb on - strand, within Shewana3_2992at 3598.628 kb on + strand, within Shewana3_2992at 3598.674 kb on + strand, within Shewana3_2992at 3598.682 kb on + strandat 3598.682 kb on + strandat 3598.682 kb on + strandat 3598.682 kb on + strandat 3598.682 kb on + strandat 3598.682 kb on + strandat 3599.014 kb on + strand, within Shewana3_2993at 3599.015 kb on - strand, within Shewana3_2993at 3599.216 kb on + strand, within Shewana3_2993at 3599.279 kb on - strand, within Shewana3_2993at 3599.488 kb on + strand, within Shewana3_2993at 3599.550 kb on + strandat 3599.558 kb on - strandat 3599.558 kb on - strandat 3599.707 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml
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3,597,179 - -2.2
3,597,262 - +0.0
3,597,262 - +0.1
3,597,337 - -0.7
3,597,342 - +0.5
3,597,349 - +0.3
3,597,353 + -0.9
3,597,441 + Shewana3_2991 0.17 +0.9
3,597,449 - Shewana3_2991 0.18 +2.5
3,597,588 + Shewana3_2991 0.39 -1.4
3,597,588 + Shewana3_2991 0.39 -1.0
3,597,588 + Shewana3_2991 0.39 -0.4
3,597,745 - Shewana3_2991 0.63 -1.2
3,597,804 - Shewana3_2991 0.73 -2.4
3,597,929 - -1.8
3,597,951 - +1.1
3,598,401 + Shewana3_2992 0.46 -2.1
3,598,403 + Shewana3_2992 0.46 +1.1
3,598,590 - Shewana3_2992 0.75 -3.4
3,598,628 + Shewana3_2992 0.81 +0.1
3,598,674 + Shewana3_2992 0.89 -1.5
3,598,682 + +1.1
3,598,682 + -2.0
3,598,682 + -1.7
3,598,682 + -0.1
3,598,682 + +0.4
3,598,682 + +0.5
3,599,014 + Shewana3_2993 0.20 -0.9
3,599,015 - Shewana3_2993 0.20 +0.6
3,599,216 + Shewana3_2993 0.47 -0.1
3,599,279 - Shewana3_2993 0.55 -0.8
3,599,488 + Shewana3_2993 0.83 +0.8
3,599,550 + -2.2
3,599,558 - -0.9
3,599,558 - -0.5
3,599,707 - -0.1

Or see this region's nucleotide sequence