Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2985 and Shewana3_2986 are separated by 361 nucleotides Shewana3_2986 and Shewana3_2987 are separated by 473 nucleotides
Shewana3_2985: Shewana3_2985 - ROK family protein (RefSeq), at 3,587,809 to 3,588,600
_2985
Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776
_2986
Shewana3_2987: Shewana3_2987 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,591,250 to 3,592,818
_2987
Position (kb)
3588
3589
3590
3591 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3588.013 kb on - strand, within Shewana3_2985 at 3588.028 kb on + strand, within Shewana3_2985 at 3588.239 kb on - strand, within Shewana3_2985 at 3588.249 kb on - strand, within Shewana3_2985 at 3588.353 kb on - strand, within Shewana3_2985 at 3588.510 kb on - strand, within Shewana3_2985 at 3588.786 kb on - strand at 3588.863 kb on - strand at 3589.031 kb on + strand at 3589.116 kb on - strand at 3589.287 kb on + strand, within Shewana3_2986 at 3589.338 kb on + strand, within Shewana3_2986 at 3589.645 kb on + strand, within Shewana3_2986 at 3589.724 kb on + strand, within Shewana3_2986 at 3589.724 kb on + strand, within Shewana3_2986 at 3589.729 kb on + strand, within Shewana3_2986 at 3589.769 kb on + strand, within Shewana3_2986 at 3589.882 kb on + strand, within Shewana3_2986 at 3589.882 kb on + strand, within Shewana3_2986 at 3589.890 kb on - strand, within Shewana3_2986 at 3589.911 kb on + strand, within Shewana3_2986 at 3590.158 kb on + strand, within Shewana3_2986 at 3590.282 kb on + strand, within Shewana3_2986 at 3590.300 kb on - strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.578 kb on - strand, within Shewana3_2986 at 3590.618 kb on - strand at 3590.680 kb on + strand at 3590.688 kb on - strand at 3590.704 kb on + strand at 3590.704 kb on + strand at 3590.766 kb on - strand at 3590.784 kb on - strand at 3590.807 kb on - strand at 3590.844 kb on - strand at 3591.256 kb on - strand at 3591.258 kb on + strand at 3591.263 kb on + strand at 3591.266 kb on - strand at 3591.304 kb on - strand at 3591.322 kb on + strand at 3591.467 kb on - strand, within Shewana3_2987 at 3591.613 kb on - strand, within Shewana3_2987 at 3591.637 kb on + strand, within Shewana3_2987 at 3591.745 kb on + strand, within Shewana3_2987 at 3591.774 kb on - strand, within Shewana3_2987
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,588,013 - Shewana3_2985 0.26 +0.3 3,588,028 + Shewana3_2985 0.28 +2.1 3,588,239 - Shewana3_2985 0.54 -0.2 3,588,249 - Shewana3_2985 0.56 +0.4 3,588,353 - Shewana3_2985 0.69 -0.1 3,588,510 - Shewana3_2985 0.89 +0.2 3,588,786 - -0.2 3,588,863 - -0.6 3,589,031 + +1.4 3,589,116 - -0.3 3,589,287 + Shewana3_2986 0.18 -0.2 3,589,338 + Shewana3_2986 0.21 +1.0 3,589,645 + Shewana3_2986 0.38 -0.1 3,589,724 + Shewana3_2986 0.42 +0.2 3,589,724 + Shewana3_2986 0.42 -1.2 3,589,729 + Shewana3_2986 0.42 -0.9 3,589,769 + Shewana3_2986 0.44 -0.3 3,589,882 + Shewana3_2986 0.51 -1.0 3,589,882 + Shewana3_2986 0.51 +0.1 3,589,890 - Shewana3_2986 0.51 -0.5 3,589,911 + Shewana3_2986 0.52 +0.1 3,590,158 + Shewana3_2986 0.66 -1.8 3,590,282 + Shewana3_2986 0.73 +0.2 3,590,300 - Shewana3_2986 0.74 -1.1 3,590,570 + Shewana3_2986 0.89 -0.5 3,590,570 + Shewana3_2986 0.89 +0.7 3,590,578 - Shewana3_2986 0.89 -0.4 3,590,618 - -1.6 3,590,680 + -0.4 3,590,688 - -0.7 3,590,704 + -1.1 3,590,704 + +0.5 3,590,766 - -0.7 3,590,784 - -0.5 3,590,807 - -1.6 3,590,844 - -0.4 3,591,256 - -0.1 3,591,258 + +1.7 3,591,263 + +1.0 3,591,266 - -0.2 3,591,304 - -0.9 3,591,322 + -1.2 3,591,467 - Shewana3_2987 0.14 -0.7 3,591,613 - Shewana3_2987 0.23 +0.1 3,591,637 + Shewana3_2987 0.25 -0.7 3,591,745 + Shewana3_2987 0.32 +0.1 3,591,774 - Shewana3_2987 0.33 -1.6
Or see this region's nucleotide sequence