Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2974 and Shewana3_2975 are separated by 68 nucleotides Shewana3_2975 and Shewana3_2976 are separated by 237 nucleotides Shewana3_2976 and Shewana3_2977 are separated by 114 nucleotides
Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446
_2974
Shewana3_2975: Shewana3_2975 - hypothetical protein (RefSeq), at 3,576,515 to 3,577,429
_2975
Shewana3_2976: Shewana3_2976 - hypothetical protein (RefSeq), at 3,577,667 to 3,578,161
_2976
Shewana3_2977: Shewana3_2977 - CMP/dCMP deaminase, zinc-binding (RefSeq), at 3,578,276 to 3,578,713
_2977
Position (kb)
3576
3577
3578 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3575.527 kb on + strand, within Shewana3_2974 at 3575.567 kb on - strand, within Shewana3_2974 at 3575.576 kb on + strand, within Shewana3_2974 at 3575.618 kb on + strand, within Shewana3_2974 at 3575.708 kb on - strand, within Shewana3_2974 at 3575.822 kb on + strand, within Shewana3_2974 at 3575.830 kb on - strand, within Shewana3_2974 at 3576.209 kb on - strand, within Shewana3_2974 at 3576.316 kb on + strand at 3576.324 kb on - strand at 3576.324 kb on - strand at 3576.324 kb on - strand at 3576.463 kb on + strand at 3576.493 kb on - strand at 3577.622 kb on + strand at 3577.636 kb on + strand at 3577.644 kb on - strand at 3577.738 kb on - strand, within Shewana3_2976 at 3577.827 kb on + strand, within Shewana3_2976 at 3577.834 kb on + strand, within Shewana3_2976 at 3577.839 kb on - strand, within Shewana3_2976 at 3578.009 kb on - strand, within Shewana3_2976 at 3578.079 kb on - strand, within Shewana3_2976 at 3578.256 kb on + strand at 3578.256 kb on + strand at 3578.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,575,527 + Shewana3_2974 0.47 +1.1 3,575,567 - Shewana3_2974 0.49 +0.2 3,575,576 + Shewana3_2974 0.50 +2.1 3,575,618 + Shewana3_2974 0.52 -0.9 3,575,708 - Shewana3_2974 0.57 -4.3 3,575,822 + Shewana3_2974 0.64 +0.8 3,575,830 - Shewana3_2974 0.64 -0.5 3,576,209 - Shewana3_2974 0.86 -0.2 3,576,316 + -2.5 3,576,324 - -1.4 3,576,324 - -0.6 3,576,324 - -0.3 3,576,463 + -0.7 3,576,493 - -0.2 3,577,622 + +0.8 3,577,636 + -0.2 3,577,644 - +1.0 3,577,738 - Shewana3_2976 0.14 +0.6 3,577,827 + Shewana3_2976 0.32 +1.4 3,577,834 + Shewana3_2976 0.34 -1.3 3,577,839 - Shewana3_2976 0.35 +0.3 3,578,009 - Shewana3_2976 0.69 -1.7 3,578,079 - Shewana3_2976 0.83 +0.5 3,578,256 + -0.1 3,578,256 + -0.3 3,578,316 - -1.5
Or see this region's nucleotide sequence