Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2939 and Shewana3_2940 are separated by 317 nucleotides Shewana3_2940 and Shewana3_2941 are separated by 37 nucleotides Shewana3_2941 and Shewana3_2942 are separated by 374 nucleotides
Shewana3_2939: Shewana3_2939 - hypothetical protein (RefSeq), at 3,530,192 to 3,530,566
_2939
Shewana3_2940: Shewana3_2940 - hypothetical protein (RefSeq), at 3,530,884 to 3,531,129
_2940
Shewana3_2941: Shewana3_2941 - thioesterase superfamily protein (RefSeq), at 3,531,167 to 3,531,535
_2941
Shewana3_2942: Shewana3_2942 - isocitrate lyase (RefSeq), at 3,531,910 to 3,533,232
_2942
Position (kb)
3531
3532 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3530.180 kb on + strand at 3530.210 kb on + strand at 3530.223 kb on - strand at 3530.232 kb on - strand, within Shewana3_2939 at 3530.268 kb on + strand, within Shewana3_2939 at 3530.314 kb on - strand, within Shewana3_2939 at 3530.314 kb on - strand, within Shewana3_2939 at 3530.377 kb on + strand, within Shewana3_2939 at 3530.411 kb on + strand, within Shewana3_2939 at 3530.447 kb on + strand, within Shewana3_2939 at 3530.827 kb on + strand at 3530.829 kb on + strand at 3530.941 kb on + strand, within Shewana3_2940 at 3531.067 kb on + strand, within Shewana3_2940 at 3531.196 kb on - strand at 3531.209 kb on - strand, within Shewana3_2941 at 3531.424 kb on + strand, within Shewana3_2941 at 3531.675 kb on + strand at 3531.731 kb on + strand at 3531.807 kb on - strand at 3531.963 kb on - strand at 3532.272 kb on - strand, within Shewana3_2942 at 3532.413 kb on - strand, within Shewana3_2942
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,530,180 + -0.3 3,530,210 + +0.4 3,530,223 - +0.5 3,530,232 - Shewana3_2939 0.11 +0.5 3,530,268 + Shewana3_2939 0.20 +0.9 3,530,314 - Shewana3_2939 0.33 -2.2 3,530,314 - Shewana3_2939 0.33 +1.3 3,530,377 + Shewana3_2939 0.49 +0.1 3,530,411 + Shewana3_2939 0.58 +2.4 3,530,447 + Shewana3_2939 0.68 +0.7 3,530,827 + -0.8 3,530,829 + -0.3 3,530,941 + Shewana3_2940 0.23 +1.1 3,531,067 + Shewana3_2940 0.74 +1.7 3,531,196 - -2.7 3,531,209 - Shewana3_2941 0.11 -1.0 3,531,424 + Shewana3_2941 0.70 -0.3 3,531,675 + -1.7 3,531,731 + +1.4 3,531,807 - -0.2 3,531,963 - -3.1 3,532,272 - Shewana3_2942 0.27 -1.0 3,532,413 - Shewana3_2942 0.38 +0.5
Or see this region's nucleotide sequence