Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2912 and Shewana3_2913 are separated by 134 nucleotides Shewana3_2913 and Shewana3_2914 are separated by 1 nucleotides Shewana3_2914 and Shewana3_2915 are separated by 197 nucleotides
Shewana3_2912: Shewana3_2912 - secretion protein HlyD family protein (RefSeq), at 3,487,437 to 3,488,531
_2912
Shewana3_2913: Shewana3_2913 - hypothetical protein (RefSeq), at 3,488,666 to 3,489,565
_2913
Shewana3_2914: Shewana3_2914 - Ion transport 2 domain-containing protein (RefSeq), at 3,489,567 to 3,489,977
_2914
Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653
_2915
Position (kb)
3488
3489
3490 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3487.678 kb on + strand, within Shewana3_2912 at 3487.678 kb on + strand, within Shewana3_2912 at 3487.723 kb on + strand, within Shewana3_2912 at 3487.979 kb on - strand, within Shewana3_2912 at 3488.021 kb on + strand, within Shewana3_2912 at 3488.145 kb on + strand, within Shewana3_2912 at 3488.272 kb on + strand, within Shewana3_2912 at 3488.272 kb on + strand, within Shewana3_2912 at 3488.284 kb on - strand, within Shewana3_2912 at 3488.292 kb on - strand, within Shewana3_2912 at 3488.490 kb on + strand at 3488.498 kb on - strand at 3488.537 kb on + strand at 3488.559 kb on - strand at 3488.564 kb on - strand at 3488.581 kb on + strand at 3488.623 kb on - strand at 3488.640 kb on - strand at 3488.665 kb on - strand at 3488.895 kb on + strand, within Shewana3_2913 at 3488.996 kb on + strand, within Shewana3_2913 at 3489.133 kb on + strand, within Shewana3_2913 at 3489.350 kb on + strand, within Shewana3_2913 at 3489.371 kb on + strand, within Shewana3_2913 at 3489.732 kb on - strand, within Shewana3_2914 at 3489.734 kb on + strand, within Shewana3_2914 at 3490.003 kb on + strand at 3490.011 kb on - strand at 3490.011 kb on - strand at 3490.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,487,678 + Shewana3_2912 0.22 +0.2 3,487,678 + Shewana3_2912 0.22 +0.2 3,487,723 + Shewana3_2912 0.26 +2.2 3,487,979 - Shewana3_2912 0.49 +1.2 3,488,021 + Shewana3_2912 0.53 +0.5 3,488,145 + Shewana3_2912 0.65 -2.0 3,488,272 + Shewana3_2912 0.76 -0.6 3,488,272 + Shewana3_2912 0.76 -1.8 3,488,284 - Shewana3_2912 0.77 -1.8 3,488,292 - Shewana3_2912 0.78 -1.0 3,488,490 + -1.3 3,488,498 - +0.6 3,488,537 + -0.4 3,488,559 - +0.5 3,488,564 - -1.2 3,488,581 + -0.7 3,488,623 - -0.2 3,488,640 - -2.0 3,488,665 - -1.9 3,488,895 + Shewana3_2913 0.25 -2.6 3,488,996 + Shewana3_2913 0.37 -1.4 3,489,133 + Shewana3_2913 0.52 -0.3 3,489,350 + Shewana3_2913 0.76 -1.7 3,489,371 + Shewana3_2913 0.78 -0.9 3,489,732 - Shewana3_2914 0.40 -1.1 3,489,734 + Shewana3_2914 0.41 -0.3 3,490,003 + -1.0 3,490,011 - +0.8 3,490,011 - -0.5 3,490,045 - +0.3
Or see this region's nucleotide sequence