Experiment: Fusidic 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2898 and Shewana3_2899 are separated by 314 nucleotides Shewana3_2899 and Shewana3_2900 are separated by 2 nucleotides Shewana3_2900 and Shewana3_2901 are separated by 21 nucleotides
Shewana3_2898: Shewana3_2898 - flagellar motor protein PomA (RefSeq), at 3,467,743 to 3,468,510
_2898
Shewana3_2899: Shewana3_2899 - exodeoxyribonuclease VII small subunit (RefSeq), at 3,468,825 to 3,469,064
_2899
Shewana3_2900: Shewana3_2900 - farnesyl-diphosphate synthase (RefSeq), at 3,469,067 to 3,469,948
_2900
Shewana3_2901: Shewana3_2901 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,469,970 to 3,471,838
_2901
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3467.838 kb on - strand, within Shewana3_2898 at 3467.952 kb on - strand, within Shewana3_2898 at 3468.037 kb on + strand, within Shewana3_2898 at 3468.156 kb on - strand, within Shewana3_2898 at 3468.286 kb on + strand, within Shewana3_2898 at 3468.455 kb on + strand at 3468.463 kb on - strand at 3468.783 kb on + strand at 3468.786 kb on + strand at 3469.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.5 mg/ml remove 3,467,838 - Shewana3_2898 0.12 +2.3 3,467,952 - Shewana3_2898 0.27 +1.9 3,468,037 + Shewana3_2898 0.38 +2.2 3,468,156 - Shewana3_2898 0.54 +3.4 3,468,286 + Shewana3_2898 0.71 +1.6 3,468,455 + -0.6 3,468,463 - +1.5 3,468,783 + +0.0 3,468,786 + -1.4 3,469,055 + -0.2
Or see this region's nucleotide sequence